| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0478 |
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| Symbol | |
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| ID | 4602733 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 588963 |
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| End bp | 589931 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639779814 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_926358 |
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| Protein GI | 119773618 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.161841 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGTCA ATCGTTTGCT GGCAACGTCT GCACTGGTCG CGCTGGTGAT TGCCCTCGGC
TGGGGGCTGA TGCTGGCTCA CACTCCTGCC AAGGCCCCGT TGCAGGGGCA AATCGAAGCC
CGTGAATACC ATGTGTCTTC CAAGGTGCCC GGCCGCATCG AACAGGTGAT GGTGCGCACC
GGCGATACAG TGGCGGCAGG GGATTTGCTC TATGTGATTG ACAGCCCCGA ACTAAATGCC
AAGTTGATGC AGGCCGAAGG GGGCCGGGAT GCGGCCCGCG CCATGCAGCT TGAGGCCGAC
ACAGGTGCCC GCAAGCAGCA GATTGCGGCC CAGAAAGAGC AGTGGCTCAA GGCAAAGGCC
GGGTTGGAAC TCGCGAAAAC CACCTTCGAG CGGGTGGATA ACCTCTTTAA CGAAGGCGTG
GTGCCACGGC AAAAACGCGA TGAAGCCTAT ACCCAGTGGC AGGCGGCCAG ATATACAGAG
CAGGCGGCAC TGGCTGTGTA TCAGATGACA GAAGAAGGCG CCCGGGAAGA AACCAAGGCG
GCAGCCGCCG GTAATGCCCG CATGGCCGAG GGCGCTGTGA AAGAAGTGAG TGCCATTCTG
GCCGACAGCC AGATGCGCGC ACCGCGGGGC GGTGAAGTGT CGGAAGTGTT GCTGCAATCC
GGCGAGCTGG CGCCGTCCGG CTTCCCTGTG GTGAGTCTGG TGGACATGAA CGACGCATGG
GCAGTGTTCC AGCTGCGGGA AGACATGCTT AAGGATGTGA AAAAAGGTGA ACTGAAACAG
CTGTATATTC CAGCACTGGA TATCAGCGCC GGGTTTAAGG TGAGCCACAT AGCTGTGATG
GGCGACTTTG CCACCTGGCG CTCCACCGAG AGTGGTCACG ACTTTGACCT GCGCACCTTC
AAGGTGGAGC TGGTGCCCCA GCACCCCATT GAAGGATTGC GGGTTGGCAT GTCTGCCATT
TGGGAATGA
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| Protein sequence | MTVNRLLATS ALVALVIALG WGLMLAHTPA KAPLQGQIEA REYHVSSKVP GRIEQVMVRT
GDTVAAGDLL YVIDSPELNA KLMQAEGGRD AARAMQLEAD TGARKQQIAA QKEQWLKAKA
GLELAKTTFE RVDNLFNEGV VPRQKRDEAY TQWQAARYTE QAALAVYQMT EEGAREETKA
AAAGNARMAE GAVKEVSAIL ADSQMRAPRG GEVSEVLLQS GELAPSGFPV VSLVDMNDAW
AVFQLREDML KDVKKGELKQ LYIPALDISA GFKVSHIAVM GDFATWRSTE SGHDFDLRTF
KVELVPQHPI EGLRVGMSAI WE
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