| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0461 |
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| Symbol | |
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| ID | 4602716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 567449 |
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| End bp | 567967 |
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| Gene Length | 519 bp |
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| Protein Length | 172 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639779797 |
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| Product | MSHA pilin protein MshA |
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| Protein accession | YP_926341 |
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| Protein GI | 119773601 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAC AGCAAGGTTT TACCCTGATT GAGTTGGTGG TGGTGATCAT CATCCTGGGC
ATTCTGGCGG TCACAGCAGC GCCTAAGTTT ATCAATCTGC AATCGGATGC GAGAGTTAGC
GCATTGAGCG GTGCCAAAGC CGCTATTCAG GGAGCAAATT CCCTGGTGTA TTCACGTGCA
GCCCTGGCTG GCGTGGAGAG AAATGCCAGC AACGCAACAC CTGCACCATC TGTTGATATT
GGGACTGGTA CTCCCGCAGT AACCCATTTC GGTTACCTGC AGGCTACAGA GGCTGAATTG
GAAAACGCTC TTGAGTTTGA CTTCGATGCT GGCACCAGTG CCACTGATCC TACAGTTGCC
AATGAGACAG CCGCTGAGTG GGTGATCTTT TCAGCAGCAG GGGTGGCAAC GATCTGGCAG
AAAGGATCGC CTGCAACATG TCGATTTACC TACACCCAGG CAACCAGCCA AACGGTAGGG
CCGGTCTTCA GTGCTATGCC AGGCGCCGAT GACTGTTGA
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| Protein sequence | MKKQQGFTLI ELVVVIIILG ILAVTAAPKF INLQSDARVS ALSGAKAAIQ GANSLVYSRA
ALAGVERNAS NATPAPSVDI GTGTPAVTHF GYLQATEAEL ENALEFDFDA GTSATDPTVA
NETAAEWVIF SAAGVATIWQ KGSPATCRFT YTQATSQTVG PVFSAMPGAD DC
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