| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0460 |
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| Symbol | |
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| ID | 4602715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 566805 |
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| End bp | 567410 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639779796 |
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| Product | MSHA pilin protein MshB |
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| Protein accession | YP_926340 |
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| Protein GI | 119773600 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCTA AACAGCAGGG ATTTTCACTG ATTGAGCTGG TGATAGTCAT AGTGATTCTT
GGGCTATTGG CGGCAACCGC CATTCCCAGA TTTTTGAACA TCACCGATGA AGCAGAAGCG
GCCAGCGTGG ATGCGGTCAG CGGTGGCTTG GTTACGGCAG TAAGTTTCGT GCGCGCCCAA
TGGGAAATCG ATGGTCGCAA CAACGACTAT GTGTTGCTGG ATGGCACCCA AATAGGGCTC
GACAAGCGCT TTGGCTACCC CACCGGCGAT AATAATGTGT CCGCCACTGA CATGACAGAT
GCCACCTGCC AGCAGGTATT TAACCTGATT TTGCAAAGCA CGCCCCGTAA TGTGCTTTAC
ACCCAGGATG CCCGTAAGCA ACGTTATACC GTGAGGGCAA TTGGCGGCGC GGGTGGCAGT
AGTAACGATC TCAATGGTCA AACGGTCAAT GGCCTGGATT TGTGTGTGTA CCATCAGGTG
TCATCTCTGA CCCTGGACCC CAACACCGGC ATTGCCAACC CGGTACCGGA TCTGACTACG
TCAGGCGCTT CAGGTATTAC CTATAATCCG GGTACCGGCA AGGTGCTCAG CTTCACCAAC
CCCTGA
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| Protein sequence | MKAKQQGFSL IELVIVIVIL GLLAATAIPR FLNITDEAEA ASVDAVSGGL VTAVSFVRAQ
WEIDGRNNDY VLLDGTQIGL DKRFGYPTGD NNVSATDMTD ATCQQVFNLI LQSTPRNVLY
TQDARKQRYT VRAIGGAGGS SNDLNGQTVN GLDLCVYHQV SSLTLDPNTG IANPVPDLTT
SGASGITYNP GTGKVLSFTN P
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