| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0457 |
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| Symbol | |
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| ID | 4602712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 563253 |
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| End bp | 565016 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639779793 |
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| Product | MSHA biogenesis protein MshE |
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| Protein accession | YP_926337 |
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| Protein GI | 119773597 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCAA AACTCAAGAT GCGCCTTGGG GATTTACTGG TCTCGGAACA AATCATTGGT
GAGGATCAGC TGACCGCTGC ACTTGCGCAG CAAAAGAGCA CCGGCCGAAA ATTGGGCCGC
ACCCTGATTG ATATGGGATA TATCGCAGAA GATCAGCTGC TTAAATTCCT GTCGCAACAG
CTGAATATTC CCTATCTCGA CATCAGCCGC CGTCCTGTGC CTCCCGCCGT AGTGAACCTG
CTGCCAGAAG TTCAGGCCCG CCGCTACCGG GCCCTGGTGA TTGAAGATAA GGGGGATGCG
GTGGTGGTCG CCATGAGCGA TCCGGCGGAT CTGCAGGCAC TGGACAACCT TGAAGTACTG
CTGGCACCCA AGCGTCTCGA TTTGGTGGTC GCTCCCGAGG CCCAGCTGAT GCAGGCCTTT
GACAACCTGT ACCGCCGCAC TGAACAAATC GCTCAGATGG CAGGGCAGTT GGAAGAAGAG
TATGCCGCAG ACGAGGCATT TGACCTTGCC GCGCTGACCG CTGGCGACAG CGACAGTGAA
ACCACTGTGG TTAAACTGCT GCAATCGATT TTTGAAGACG CAGTGCAGAT GCGGGCATCC
GACATCCACA TTGAACCCGG CGATAAATCG CTGCGCATCC GTCAGCGCGT GGATGGCCAC
TTGCAGGAAA CCATACTAAA CGAGGTGACC ATAGCCGCGG CGCTCGTGCT GCGTCTCAAG
CTGATGGCCG GGTTGGATAT CTCCGAAAAA CGTTTGCCGC AGGATGGTCG TTTCCATATG
GAAGTTAAAG GCCACAAAAT AGACGTGCGT ATCTCCACCA TGCCGATTTA TCACGGCGAG
TCTGTGGTGA TGCGTCTTCT GGACCAGTCG GCCGGTTTGT TGACCCTGAA TGAAACGGGT
ATGCCGGATG CGATTTTGCA GCGGGTACGC AAACAAATTA AGCGCCCCCA CGGCATGTTA
TTGGTGACAG GCCCTACGGG TAGCGGCAAA ACCACTACTC TCTACGGCAT CCTGAGTGAA
CTCAATACGG CCGATCGCAA GATAATCACG GTTGAAGATC CGGTGGAATA TCAGCTGCCA
CGGATCAATC AGGTGCAGGT TAACCACAAG ATAGGTCTCA ACTTCTCCAA CGTGCTGCGC
ACCACATTAC GTCAGGACCC CGACATCATC ATGGTGGGGG AGATGCGTGA CCACGAAACC
GTAGAAATCG GCTTGCGGGG CGCGCTGACG GGTCACTTTG TGCTCTCAAC CCTGCACACC
AACGATGCCG TAACCTCGGC GCTGAGACTT CTGGACATGG GCGCAGCAAG CTACTTGGTG
GCCAGTGCAC TGCGGGTCAT CATTGCCCAG CGATTGGTGC GCCGCGTATG CCAAAATTGC
GCCGTGGATT ATCAACTGAC CAGTCAGGAC AAGGCTTGGC TGACCAGTGT CAGCAAAGGA
GTGGATTTTT CTCAGGCCCG TTTTCGCATG GGCACTGGCT GCCAAAGCTG TAGTGGCACA
GGTTACCGAG GTCGTATTGG TATTTTCGAG CTGCTGGAGC TGGATGAAGC CATGGTGGAT
GCCATGCGCA CCGGCAACCC TCAGGCATTT GCCCAGGCGG CTTACGCCAG CCCTAACTTT
ACTCCCTTGC TCATCTCGGC ACTCAATTAC CTTAAGCAGG GCATGACCAC GATAGAAGAG
GTTGCCAGAC TGGTGGAGGA TGTCAGCGAA ACCCAGATAC CACTGTCGCA GGAAATGGCC
CAGTTTGATG GTGCAGGAGC CTGA
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| Protein sequence | MKPKLKMRLG DLLVSEQIIG EDQLTAALAQ QKSTGRKLGR TLIDMGYIAE DQLLKFLSQQ
LNIPYLDISR RPVPPAVVNL LPEVQARRYR ALVIEDKGDA VVVAMSDPAD LQALDNLEVL
LAPKRLDLVV APEAQLMQAF DNLYRRTEQI AQMAGQLEEE YAADEAFDLA ALTAGDSDSE
TTVVKLLQSI FEDAVQMRAS DIHIEPGDKS LRIRQRVDGH LQETILNEVT IAAALVLRLK
LMAGLDISEK RLPQDGRFHM EVKGHKIDVR ISTMPIYHGE SVVMRLLDQS AGLLTLNETG
MPDAILQRVR KQIKRPHGML LVTGPTGSGK TTTLYGILSE LNTADRKIIT VEDPVEYQLP
RINQVQVNHK IGLNFSNVLR TTLRQDPDII MVGEMRDHET VEIGLRGALT GHFVLSTLHT
NDAVTSALRL LDMGAASYLV ASALRVIIAQ RLVRRVCQNC AVDYQLTSQD KAWLTSVSKG
VDFSQARFRM GTGCQSCSGT GYRGRIGIFE LLELDEAMVD AMRTGNPQAF AQAAYASPNF
TPLLISALNY LKQGMTTIEE VARLVEDVSE TQIPLSQEMA QFDGAGA
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