| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0456 |
|---|
| Symbol | |
|---|
| ID | 4602711 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 562057 |
|---|
| End bp | 563256 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639779792 |
|---|
| Product | MSHA biogenesis protein MshN, putative |
|---|
| Protein accession | YP_926336 |
|---|
| Protein GI | 119773596 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTCA TCAATCAAAT GCTGAAAGAT TTGGATAAGC GTGCCGAGCC GCATCAGCTG
CAGCAGCTGC CATCCACTGT GGCCATTCCA GTGAACAAAT CTCCCGGGCT GCCCTGGCGT
TGGCTTATCC TGCTGTCGCT GCTCCTTGTT GCCATCGCGC TGGTGCTTTG GAACCTGAAA
GCATCCAATG CCAAAGACGC TATGGTATTA AGCCCTATGG TTTCAGGACA GCAAGCTGAG
TTAAACACAG CAAGTGCTGC GCCGGTAAAA ATGGAACCTG CGAGCAATGC TCAGGTGTCA
CATGTTCAGG AGCCCGCAGA TGCCAGCAGC GACACAGCGT CGGGCTTGGC GAAAGAGCCC
GCGGGCGAGT CAGATAAATC AATCAAAGAC ACGACGGGGA ATGGCGAGTC TGAAACCTTA
GCCGAGTCAG TGGCAGTATC ATTCGCAGGA TCAGCAAACG CGCCTGCCCC GTCAGAAACG
TCAGTTGCAG GCGAGGCAAC TGTACTGGCT TTGCAAGTCA ATACCTCGAG CGAGCCGCCG
GTGATTGACT CTTCCAGCGT CGCCATGAAT ACCAATACGC CATCCGCAGG CAGCATGGCT
GTCACCGAAG TGGTGCTGCC CCCGGCAGAG CAAGCCGATC GCGCCATGCT AAAGGCCAAT
GGAGCTAGGG ATGCAGGCAA GCTGGATGAG GCGATGCGCC AATACGCCAT GGCGCTTTCT
TATGAGCCCG CGCGCCATGA AGCAAGACGC CAATTGGCGG CGCTTCACTA TGGTCAGGGG
CAAGCAGGCG AAGCCATCAA ACTGCTCGAG CGTGGGTTGG TGCAATTCCC TGAGCAGTCG
TCTTTTGCAC TACTTCTGGG CCGTTTGTGG CGGGAACAGG GCAATAAATC GCAGGCGCTG
GCAGCCCTTG ATGTCATTGG GGATACAGAT TCTCTTTCTC GGGATAAGTG GCTATTGGTG
GCCGATATTG CCCGTGAACA AGACGATCAC GCGCTGGCCG AAGCCGCCTA CCAAAAGTTG
TTGGGCACCG GTATGGAAAA AGCACAATGG TGGTTGGGGC TTGCCTACGC ACAGGATGCA
CAGGGCAAGA TGGCAGATGC CCGTTATCAC TATCAGCGTG CCCTTGGCAC TGCCGGGTTA
TCATCCGACG CCCGCGCCTA CATAGAAAAC AGATTGATGC AGTTGGGAGA TAACCAATGA
|
|---|
| Protein sequence | MSVINQMLKD LDKRAEPHQL QQLPSTVAIP VNKSPGLPWR WLILLSLLLV AIALVLWNLK
ASNAKDAMVL SPMVSGQQAE LNTASAAPVK MEPASNAQVS HVQEPADASS DTASGLAKEP
AGESDKSIKD TTGNGESETL AESVAVSFAG SANAPAPSET SVAGEATVLA LQVNTSSEPP
VIDSSSVAMN TNTPSAGSMA VTEVVLPPAE QADRAMLKAN GARDAGKLDE AMRQYAMALS
YEPARHEARR QLAALHYGQG QAGEAIKLLE RGLVQFPEQS SFALLLGRLW REQGNKSQAL
AALDVIGDTD SLSRDKWLLV ADIAREQDDH ALAEAAYQKL LGTGMEKAQW WLGLAYAQDA
QGKMADARYH YQRALGTAGL SSDARAYIEN RLMQLGDNQ
|
|---|
| |