| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0452 |
|---|
| Symbol | |
|---|
| ID | 4602707 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 558532 |
|---|
| End bp | 559185 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639779788 |
|---|
| Product | MSHA biogenesis protein MshJ |
|---|
| Protein accession | YP_926332 |
|---|
| Protein GI | 119773592 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGTT TCGATTCTCT CGCGACAAAA TACGACGCCC TGACCTTAAG AGAGCGGGGC
ATTATCTTTT TTGCCGCGCT GTTTGGATTG CTTATGCTGC TCTCCATGCC GGTGGAGAGC
CTGTGGAAGG AATATCGCCT GGCAAGCCAG ACGCTAAGTC AAACCCGGGC CACTAACCAC
ATCAGTGAGC AGCAGCTAGC TCTGTATCAG GAGCGATTGG CTCAGGATCC CCATCGGGAT
TTTCTTCAGC GCAAGGCACT GCTGGAGAAA GAGCATCAAC AGCTGGATAA AGCGTTGGAA
GAGCAAACCC TGGATATGGT ACCCGCCCGT CTGATGCCCA CTGTCTTGGC CAGGATGCTG
GATGGTGCCA AGGGCCTGAC ACTGACCGGT TTTGAATCCA TTGCTCCCGT GCCCCTGATT
GAAGTGGGGG AGGGCGAGCA GAAACTGAAC CTGTATTCCC ACGGCATGGC CCTGACGCTG
GAAGGGGATT TTTTTGCGGT GCAGCGGTTT GTTGAGGCGG TGGAAGGTCT TGAAAACAAG
CTTTATTGGA AGCGAATGGA TTACCGGGTT AAGGCGTACC CCAAGGCCGA GGTGCAGTTG
ATGCTGCATA CCCTGAGCGT AAACGAGGAC TTTATCCGTG TGGCGAATCA GTAG
|
|---|
| Protein sequence | MSRFDSLATK YDALTLRERG IIFFAALFGL LMLLSMPVES LWKEYRLASQ TLSQTRATNH
ISEQQLALYQ ERLAQDPHRD FLQRKALLEK EHQQLDKALE EQTLDMVPAR LMPTVLARML
DGAKGLTLTG FESIAPVPLI EVGEGEQKLN LYSHGMALTL EGDFFAVQRF VEAVEGLENK
LYWKRMDYRV KAYPKAEVQL MLHTLSVNED FIRVANQ
|
|---|
| |