| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0441 |
|---|
| Symbol | |
|---|
| ID | 4602696 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 544152 |
|---|
| End bp | 544676 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639779777 |
|---|
| Product | ATP-dependent protease peptidase subunit |
|---|
| Protein accession | YP_926321 |
|---|
| Protein GI | 119773581 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG5405] ATP-dependent protease HslVU (ClpYQ), peptidase subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTACTA TCGTATCCGT CCGCCGTAAC AATCAGGTGG TCATCGCAGG TGATGGCCAG
GTCTCCCTCG GCAATACCGT GATGAAGGGC AATGCCCGCA AGGTACGCCG CCTGTACCAC
GGCAAGGTAT TGGCCGGATT TGCCGGTGGC ACCGCTGATG CTTTCACCCT GTTCGAGCGC
TTTGAGGCCA AGCTGGAAAT GCACCAGGGC CATTTAATGC GCGCAGCGGT GGAGCTCGCC
AAAGACTGGC GCACCGACCG CATGCTGAGA AAACTCGAGG CCCTGCTGGC CGTGGCCGAT
GCCGAAAGCT CACTCATCAT TACCGGTAAC GGCGACGTAG TGCAGCCCGA AAACGACCTG
ATTGCCATCG GCTCCGGCGG TAACTTCGCC CAGGCCGCCG CCACTGCGCT CTTGGAAAAC
ACCGACCTTG GCGCCCTCGA GATTGCCGAA AAGTCACTGA CCATCGCCGG CGATATTTGC
GTATTCACCA ACCAGTTCAA GACCATCGAA GAACTGAGTT ACTGA
|
|---|
| Protein sequence | MTTIVSVRRN NQVVIAGDGQ VSLGNTVMKG NARKVRRLYH GKVLAGFAGG TADAFTLFER
FEAKLEMHQG HLMRAAVELA KDWRTDRMLR KLEALLAVAD AESSLIITGN GDVVQPENDL
IAIGSGGNFA QAAATALLEN TDLGALEIAE KSLTIAGDIC VFTNQFKTIE ELSY
|
|---|
| |