| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0430 |
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| Symbol | |
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| ID | 4602685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 527928 |
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| End bp | 531152 |
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| Gene Length | 3225 bp |
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| Protein Length | 1074 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639779766 |
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| Product | putative transcriptional regulator, CadC |
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| Protein accession | YP_926310 |
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| Protein GI | 119773570 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGAGA CGATTTTCTT CTTCGGCGAC TGGCAGGTTT CGCCCCAAAG CAATCGCGTC
AGCCGCGGCA GTATCAGCCG CCAGCTGGAG CCCAAGGCCA TGGAGGTACT CTTGTATCTT
TGCCAGCGCC AGGGAGAGGT TGTCAGCAGT GATGAACTGT TGGATGCCTG TTGGGCCGGG
CTTGAGACAG GCGATAATCC GCTGCATAAA ACCATCGCAG TGCTGCGCCG TGCATTGGAT
GACAGTGCCA CCAATCCCCA ATTTATCGAA ACCTTGCGCC GCCGTGGTTA CCGTACCCTG
GCACCTGTTT CATTTCCTTC TGGTCATGAA CAGGGGGCTG CCGAAGGCGT TTGGCAGGCG
GGATCACCTT TTCCGGGGCT GCGCCCCTTT GGCAGCCAGG ATGCCGATGT ATTTTTCGGC
CGCCGGGAGC AAATCAATAC CCTGCTTGAG AATATCCATC GGCAGGTTCG CAGTGGCAGG
GGCCTGTGTT TGCTGCTTGG CCCCAGTGGC AGCGGGAAAA CATCGCTGAT CCACGCCGGT
ATTCTGCCTA ACCTCAGTAC CCCCCAGGGA GTTAATGGCA TCGGCCTGGT CTCCAGCGCC
GGGCTCGATA TGGCCGATGT GGCCCCGGGT GCGCTGATGC TGGAGCTGGC ATCGGCCATG
CTGGACTGGG AGGTGGATGA CAAGCCAGTC TTTGAGGGCG AAAGTGCCGA CAGCCTGGCC
CTTATGTTTG GCGAGAGCAG CGAGTCTGTC ACGGGGCGTT TATTGGCGGC CTTACCCTCC
GGACGCTGGG AAAAACCGCG TTTTGCACTG GTGGTAGACC GGCTCGAAGT TCTGCTTTCT
TCGCCTGCGT TTGATGAAAC AGACAGAAGC GCGTTTCTGG CGTTGCTGGA TACCTTTTCC
CGCAGTGGGG CCGTGCTGGT GCTCTGCGCT TGCCGTAACG ACTTTTATCC GCTGGTGGTA
AGCCACAGCG TGCTGATGAC CGGCAAGGGC AATGGCGCAC ACTTTGACCT CGAGCCACCC
AGCCGTCAAT CGCTGCTGCA AATGATCCGT TTGCCTGCGG CGGCAGCCGG GCTCAGTTGG
GAATATGACA AAGACAACGC TCTGGGGTTG GATGAGCTTC TTTGCCGTGA GGCGGCCGAG
AGTCCGGATG CCTTGCCCAT GCTGCAATAC CTGTTGCAGG CGCTGTATCT GGCGCGGGAT
GAATCCAATC AGTTGAAGCT CGATGTCTAC CACAGACTGG GTGGCATCGA AGGCGCCATC
GGTCGCGCCG CCGATGAGGC CATTGCCGAA CTCAGTGCGT CAACCCGCGA TGCCTTGCCC
GGCGTGTTGG CGCGGCTGGT GACTCTCAAG GAAGACGAGT TGTCGGTAAC CAGTCGCAGT
GCCCGATACA GTGAGCTTTC CACCGAGGAT GAGCGCCGAC TGGTACAGGC GCTGGTGGAC
AGCCGCCTGT TTGTCTCCCA CCTTGATGGC GCCGAACCCA GTTTCAGTGT GGCCCACGAA
GCCTTGCTGC GGCGCTGGCG CCGTGCATCG CGCTGGATTG AAGAACATCG GCAGTTGCTG
GCGCTCCAGT CGCGCCTGTT TCATCAGGCC AGCCGCTGGC ACGGTGCAGG GCGTGAACGT
GACTATCTGC TCGGGCCGGG CAAGCCCATG CTGGAAGCAA GGCAACTTCT CCAACACCGC
CAGTTGGTAT TGGATGCCCA AAGCCGTGAA TTCATTCAGG CCTCCCTAGC CAGGGACGTA
CGCCGCAGTT GGATAAAGCG CGGCACAGTG GCACTGCTTG GGGTACTGAC GCTGATTTCT
GTGGTAATGG GCGTAAGAAG CATGCAAGCC GAGCGTCTTG CCACAGAGCG GCGCCTCGCG
GCGGAAGACT TGCTTGGCTT TATGGTGGGC CAGTTTGCTG ACCGGCTGCG CAGCATCGGC
CGTATGGACT TGCTCGACGG GGTCAGCAAC AAGGCGCTGG ATTATTTCAG TACGCCCGAC
GCCAGTTTGT CGGTGGCTGC CCTGTTTCGT CATGGTCAGA CTTTGGAGGC CATGGGTGAG
GTGGCTTACA GTCGTGAGAA GCCCGATGAG GCCAGGGCCG CGCTGCTGGC AGCGCGGGAT
AAGCTATTGC CGCTGCGGGG GCGTGATGTG CCTCAGCTCG AACTGTATAA AACTCTGGGT
GCCAACTCAT TCTGGCTGGG GCAGATCGAG TACGACAACA ATAACTGGGA AGAGGTAAAA
ATCTGGTTCG GGGCTTACCT GGAGTACAGC GAAGCCATGG TGAAACTGGC ACCCGAAAGC
CGGGATGCGC GTTTGGAGCT ATCTTATGCC GAAAACTCCC TCGGCAGTCT CGCCCTGAAG
CTGCAGGATT ATCCCTTGGC GCAGCAAATG TTTGAGGCCT CCCTCGCCCT TAAGTTGCAG
CTGCTCAGCG ACGCCCCCGA CGATGGACAG CTGATTGCCG ATGTGGCCGA TACCCAATCC
TGGCTTGCCA GCGCGGCCAT GGCCACGGGG AATATTCCCC TTGCAGTGCA GCTGCATACG
GATATCGGCA CCCTGCTTGG TCGCTCCAGT GAGGCCTACG CCCTCGACCG CCTTTCCCAC
AGTCAGGCCA ATCTTGCCCG CCTGTATGAG TGGCTTGGCA ATAACGATGC CGCCAGGGAC
GCCATCCTCA GGGCCAAAGC CATTCGCATA CAGGCTCTGG CCAAAGATCC GGGTAATCAA
TCCTGGCGCT ATGACTTGCT GATTATCGGC CTGCACGAGA TTGAACTCGG CATAGCTGCC
AGCTCGGAAA CCGAACTGGA TGCCAGCAGG CAGTTGCTCA GCGCCGAGGC TGAGTCCCTG
TCGGCCCAGC GCCAGCAAAA ATTTGCCGAG CTGTATCCGC TTGCGGCTGG CAGAAGGTTG
TTGCAACTTG GGCATTTTGC CGCCGCCGAA GCCATGGCCG AGCAGGCAAT CGTTGTGTTG
TCGGCAGGGG CTGCGCAGGA GTCCGATGAC TGGGAAGATA AGGCCCGTAT GGCGGATGCC
GAATTGCTGT TGGCACAGAG CCAGTCGGCG CAGGGAAAAG GTGAGACAAG GTTGGCTATG
TGTCAGTCGG TGAAAACCCG CCTCGCCCCT GTTATCGCCG TGTCACGGGC ACCACGCTTT
GTGCGTCCCT ATGTGATGGC ATTGGAATGT CTGGGGCAGA CGGATGCCGC CGATGCTCTT
AAAGGCCCGC TTGCTGCTCA GGGGGTTAGG TTCCAGGCTT TCTGA
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| Protein sequence | MTETIFFFGD WQVSPQSNRV SRGSISRQLE PKAMEVLLYL CQRQGEVVSS DELLDACWAG
LETGDNPLHK TIAVLRRALD DSATNPQFIE TLRRRGYRTL APVSFPSGHE QGAAEGVWQA
GSPFPGLRPF GSQDADVFFG RREQINTLLE NIHRQVRSGR GLCLLLGPSG SGKTSLIHAG
ILPNLSTPQG VNGIGLVSSA GLDMADVAPG ALMLELASAM LDWEVDDKPV FEGESADSLA
LMFGESSESV TGRLLAALPS GRWEKPRFAL VVDRLEVLLS SPAFDETDRS AFLALLDTFS
RSGAVLVLCA CRNDFYPLVV SHSVLMTGKG NGAHFDLEPP SRQSLLQMIR LPAAAAGLSW
EYDKDNALGL DELLCREAAE SPDALPMLQY LLQALYLARD ESNQLKLDVY HRLGGIEGAI
GRAADEAIAE LSASTRDALP GVLARLVTLK EDELSVTSRS ARYSELSTED ERRLVQALVD
SRLFVSHLDG AEPSFSVAHE ALLRRWRRAS RWIEEHRQLL ALQSRLFHQA SRWHGAGRER
DYLLGPGKPM LEARQLLQHR QLVLDAQSRE FIQASLARDV RRSWIKRGTV ALLGVLTLIS
VVMGVRSMQA ERLATERRLA AEDLLGFMVG QFADRLRSIG RMDLLDGVSN KALDYFSTPD
ASLSVAALFR HGQTLEAMGE VAYSREKPDE ARAALLAARD KLLPLRGRDV PQLELYKTLG
ANSFWLGQIE YDNNNWEEVK IWFGAYLEYS EAMVKLAPES RDARLELSYA ENSLGSLALK
LQDYPLAQQM FEASLALKLQ LLSDAPDDGQ LIADVADTQS WLASAAMATG NIPLAVQLHT
DIGTLLGRSS EAYALDRLSH SQANLARLYE WLGNNDAARD AILRAKAIRI QALAKDPGNQ
SWRYDLLIIG LHEIELGIAA SSETELDASR QLLSAEAESL SAQRQQKFAE LYPLAAGRRL
LQLGHFAAAE AMAEQAIVVL SAGAAQESDD WEDKARMADA ELLLAQSQSA QGKGETRLAM
CQSVKTRLAP VIAVSRAPRF VRPYVMALEC LGQTDAADAL KGPLAAQGVR FQAF
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