Gene Sama_0424 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0424 
Symbol 
ID4602679 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp520976 
End bp521746 
Gene Length771 bp 
Protein Length256 aa 
Translation table11 
GC content57% 
IMG OID639779760 
Producthypothetical protein 
Protein accessionYP_926304 
Protein GI119773564 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACCATT CCTTCAGGCT TTTGCTGCTG CTCCTGACTG TGTTGCCCGG TATCACTGCG 
CCCCTGGCCC AAGAAAAACT GAATTCATTG TCATTTCTGA CCGAAGAGTA CCCCCCGTTT
AACTTCACCC GCGATGGCAA GGTGCAGGGG ATCGCCGTGG ACTTGCTGCT AAGCGCGGCC
GCCCTTGAGG GGCAAAGCAT CAGCCACGAA TCCATCCGCG TGTATCCCTG GACCCGGGCT
TACGCCATGG CGCTGCGTGG CCATAACATG GTGCTGTTTT CCACCACCCG CACTGCGGAG
CGGGAGTCAC TGTTTCATTG GGTCGGCCCC ATAGCCCCCA TGCGGATAGT CTTGATAGCT
CCCAGGCAGC GGCATATCCG CATTAACTCG TTGGCAGACT TAAAAGATAA GCGCATTGGT
GTGGTCACCA ACGACATTGG GGAAGAAGTG CTGGCCCAAC TTGGCCTGGC GGACCAACTT
CAATCCAATG CCAGCGCCGA CTTGCTGCTG AAGATGATGG CCCGTGGACG TATCGATCTT
TGGGCCTACG AAGAAACCGT CGCCAAATGG CTCATCAAAG AGTCGGGGAT GAGCTTTGAT
GACTTTGAGG TGGTGTATCT GCTCAGAGAT GCCGAGCTCT ACTATGCCTT CAGCCGCGAC
GTGCCCGAAG CATTGCGGGT GCAACTGCAG CACGCCCTGG ATACGCTCAA AACACCTCTG
GCAGACGCAA CCAGCGGCTG GGCAACCATT ACCCAAAAGT ACCTGCAGTG A
 
Protein sequence
MHHSFRLLLL LLTVLPGITA PLAQEKLNSL SFLTEEYPPF NFTRDGKVQG IAVDLLLSAA 
ALEGQSISHE SIRVYPWTRA YAMALRGHNM VLFSTTRTAE RESLFHWVGP IAPMRIVLIA
PRQRHIRINS LADLKDKRIG VVTNDIGEEV LAQLGLADQL QSNASADLLL KMMARGRIDL
WAYEETVAKW LIKESGMSFD DFEVVYLLRD AELYYAFSRD VPEALRVQLQ HALDTLKTPL
ADATSGWATI TQKYLQ