| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0421 |
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| Symbol | |
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| ID | 4602676 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 518800 |
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| End bp | 519885 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639779757 |
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| Product | TMAO reductase system periplasmic protein TorT |
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| Protein accession | YP_926301 |
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| Protein GI | 119773561 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02955] TMAO reductase system periplasmic protein TorT |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.553546 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGACA CCCAAGGGAA CATGAAAATC GTAACCCTGC TTATTGCATT TATTGCCCTG
ACCGCCTTTG CTGAGGGCCC CGGCCTGGAG ATGCATATCG ACGGTAACGC CGGGATTTAC
CAGGCACCCG AGAAAGCGAC CCGCCCATGG CGTATCTGTG CACTCCTGCC CCATGGCAAG
GATCATTACT GGTGGGGGGT TGCCTGGGGA TTGTCACAGG AAGCACAGCG GCTGGGGATA
GAGATTGGCA TTTATGACGC CGGGGGCTAC GACAAGCTGG CCGAACAAAA AAGGCAACTG
AAACAGTGTC ACCGTCTGAA AGCCAACGGC TACATCATTG CAGCTATCAC CGCCGATGGT
CTTTCGGCCG AAGTGGAACT TTTGATGGCC GATGGCATTC CTGTAATCGA TCTGGTCAAC
GGCATGAACA GTGAGGTGAG CAGCCGCTCA CTGGTATCCT TTGTCGATAT GGCTACTGCC
GCCGCCAAGT ACATGCTGGC AACCGAGCCC AACCGCCCCC TCAATGTAGC CTGGTTTCCC
GGCCCCGATG GTGCTGCCTG GGTAAAAGAT GCCGAAACGG GATTGGCTGA AGCCATAGTG
GGGGAAGATA TCAGGCTGGT GCACGGCGGC TATGGCATGA CGGAAACCTT TGTTCAGGCA
GACTTGGTCC GTGGTTTGGT CAGCCGCATT CAGGCCGAAT ACATCATCGC CAACGCGGTA
GCGGCTACCG TGGCGGCCAA ATATTTCGGT AACCGGGGCA AAACCAAGGT CATAGCCTTT
TACTCCAATC CACAGACCAT AGAGCTGGTC CGGGATGGCA CGCTGCAGGC CACAGTCACC
GACTCACCGG TACTGCAGGC CAGGGTGTCG GTGGATCTGG CTGTGCAATG GCTGGAACAG
GGCAGCGCCC CGCGACTTGT CAGTCCGGTG ATTCAGGTAC TGACCAGTGA AAATCTGGCA
GCGGCAGATT TAAGTCTGAC ACTGCCGCCG GAACATCAGT GGATGATCCA TCAGGATCTC
TCCCCCATCG GCGGCGCTAC AGCGCTGCAA AGGCGTAGTC AGCTCCAAGC GCCAAAAACA
GACTGA
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| Protein sequence | MTDTQGNMKI VTLLIAFIAL TAFAEGPGLE MHIDGNAGIY QAPEKATRPW RICALLPHGK
DHYWWGVAWG LSQEAQRLGI EIGIYDAGGY DKLAEQKRQL KQCHRLKANG YIIAAITADG
LSAEVELLMA DGIPVIDLVN GMNSEVSSRS LVSFVDMATA AAKYMLATEP NRPLNVAWFP
GPDGAAWVKD AETGLAEAIV GEDIRLVHGG YGMTETFVQA DLVRGLVSRI QAEYIIANAV
AATVAAKYFG NRGKTKVIAF YSNPQTIELV RDGTLQATVT DSPVLQARVS VDLAVQWLEQ
GSAPRLVSPV IQVLTSENLA AADLSLTLPP EHQWMIHQDL SPIGGATALQ RRSQLQAPKT
D
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