Gene Sama_0420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0420 
SymbolubiA 
ID4602675 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp517977 
End bp518849 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content56% 
IMG OID639779756 
Product4-hydroxybenzoate octaprenyltransferase 
Protein accessionYP_926300 
Protein GI119773560 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0382] 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases 
TIGRFAM ID[TIGR01474] 4-hydroxybenzoate polyprenyl transferase, proteobacterial 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAAA TGGCGCAAAA ATGGGATGCC TATTACCGAT TGATGCGACT CGACAGACCC 
ATAGGCACCA TGCTGCTGCT GTGGCCCTGC CTGATGGCAC TGCTGCTGGC CGCTGACGGA
ATGCCCGACT TACGGGTGCT TATCATCTTC ATCATTGGAG TGGTGGTGAT GCGCGCCTGT
GGTTGCATCA TCAACGACTA CGCCGACCGC AAGCTCGATT CCCATGTGGC CCGTACCCGG
TCGCGGCCTC TGGCCAGCGG TGAGGTCACG GTTGCCGAGG CCCTCACCCT GTTTGTGGTG
TTGGGGTTGT TCGCCTTTTC GTTGGTGTTG TTGCTCAACC CTCTGGTGGT GCAGCTCTCG
GTGGTGGGCA TTATTCTGAC CATCATTTAT CCCTTTACCA AACGCTGGAC CAATATGCCG
CAGATGTTTT TGGGGGTGGT GTGGAGCTGG TCCATTCCCA TGGCCTATGC GGCACAAACC
GGTGAAGTGC CTGCCTCTGC CTGGTGGCTC TTTGCGGCCA ACTGGTGCTG GACAGTGGCC
TACGACACCA TGTATGCCAT GGTTGACCGG GATGACGACC TCAAGGTGGG GATTAAGTCC
ACCGCGATTT TATTTGGTCG CTTTGACCGT GAAATTATAG GCGCGTTTCA GCTTGCGGCC
CTGGGCTGCT TTATCGCGGC GGGCTGGAGT GGCGATCGCG GCCTGCTGTA TGGTCTGGGT
GTGCTGACCT TTGTGGGCTT TTCTGCCTAT CAACAACGGC TCATTTATGG CCGTGAACGG
GGCGATTGTT TCAAGGCTTT TTTAAACAAC AACTGGGCCG GGCTCAGTCT GTTTTTGGCG
CTTGGAGCTG ACTACGCCTT TGCAGCGCTG TAG
 
Protein sequence
MSKMAQKWDA YYRLMRLDRP IGTMLLLWPC LMALLLAADG MPDLRVLIIF IIGVVVMRAC 
GCIINDYADR KLDSHVARTR SRPLASGEVT VAEALTLFVV LGLFAFSLVL LLNPLVVQLS
VVGIILTIIY PFTKRWTNMP QMFLGVVWSW SIPMAYAAQT GEVPASAWWL FAANWCWTVA
YDTMYAMVDR DDDLKVGIKS TAILFGRFDR EIIGAFQLAA LGCFIAAGWS GDRGLLYGLG
VLTFVGFSAY QQRLIYGRER GDCFKAFLNN NWAGLSLFLA LGADYAFAAL