| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0412 |
|---|
| Symbol | |
|---|
| ID | 4602667 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 508759 |
|---|
| End bp | 509517 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639779748 |
|---|
| Product | uridine phosphorylase |
|---|
| Protein accession | YP_926292 |
|---|
| Protein GI | 119773552 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG2820] Uridine phosphorylase |
|---|
| TIGRFAM ID | [TIGR01718] uridine phosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATG TATTTCACCT GGGTTTAACA AAAAACATGT TGGATGGTGC CACGCTGGCG
ATTGTGCCTG GCGACCCAGA GCGTGTGAAA CGTATTGCCG AATTGATGGA TAAGCCAACC
TTCCTGGCCA GCCATCGGGA ATTTACCAGT TACCTGGCGT ATCTGGATGG CAAACCTGTT
GTGGTTTGTT CAACCGGTAT CGGTGGTCCA TCGACCTCTA TTGCTGTCGA AGAGCTGGCG
CAGCTGGGTA TCAACACCTT CTTGCGTGTC GGTACCACGG GTGCGATTCA GCCCCATGTG
AACGTAGGTG ACCTGATTGT GACCCAGGCG TCAGTGCGTC TGGATGGTGC CAGCCTGCAC
TTTGCCCCGA TGGAGTTCCC TGCGGTAGCC AACTTTGAGT GTACCACTGC CATGGTGGCG
GCCTGTCGTG ATGCGGGTGT TGAGCCCCAT GTTGGTGTGA CCGCTTCCAG CGATACCTTC
TATCCTGGTC AGGAGCGTTA CGACACAGTA TCAGGTCGCG TGACCCGCCG TTTCGAAGGC
TCCATGAAAG AGTGGCAGGA AATGGGCGTG CTGAACTATG AAATGGAGTC GGCCACTCTG
TTTACCATGT GTGCTTCCCA GGGCTGGCGC GCTGCCTGTG TGGCGGGTGT GATTGTGAAC
CGTACTCAGC AGGAAATCCC TGATGAGGCG ACCATGAAAA ATACCGAAGT CAGTGCTGTG
TCTGTGGTGG TTGCTGCTGC CCGCAAACTC TTGGCTTGA
|
|---|
| Protein sequence | MADVFHLGLT KNMLDGATLA IVPGDPERVK RIAELMDKPT FLASHREFTS YLAYLDGKPV
VVCSTGIGGP STSIAVEELA QLGINTFLRV GTTGAIQPHV NVGDLIVTQA SVRLDGASLH
FAPMEFPAVA NFECTTAMVA ACRDAGVEPH VGVTASSDTF YPGQERYDTV SGRVTRRFEG
SMKEWQEMGV LNYEMESATL FTMCASQGWR AACVAGVIVN RTQQEIPDEA TMKNTEVSAV
SVVVAAARKL LA
|
|---|
| |