| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0388 |
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| Symbol | |
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| ID | 4602644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 480564 |
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| End bp | 483077 |
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| Gene Length | 2514 bp |
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| Protein Length | 837 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639779725 |
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| Product | putative diguanylate phosphodiesterase |
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| Protein accession | YP_926269 |
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| Protein GI | 119773529 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACATTG GCAAGAAGTT TTTGGTTTTT ATCGCGGCCT TTTGTATACC GGCAATCTTG
CTGGTGTATT GGGGCATGGG ACTTTGGTTT GAACGCAAGG CCTCCTCATT TCTTGAGCAA
TCCATTGCTC ATGAACTCGC CAATATTAAT GAGCAATATC AGCGTAGCCT CCGACGGCAA
TTACTGCTGA GCCACATCTA TGCCGGCCCG CTGAGCAGTC TCTCTCCGGA TGCGCAGGCA
AGTATGGATT CAGCCTGGTA TGAACACACA CACGCGCTTG GGCTGCATTT TTATCGTTAT
TCTGATGCAG GACTGATTTC CTTCGGTGTC GGCAACGATT ATCCCTTATC TCCCGAGATG
GTCTCTGCGC TGGTGAACGG AACTGAGGAT GTTGCGGTCG CCCTGCTGCT GGACTCAGGT
CCCTTACTGA TCACCATCAT TACGCAGGGC GACTCCCGGG TGCTTGTGTC CCGCAGCCTG
TCTGAGGAAG AACTGACCAG ATTCGGGCGC TCTGGCTTTG TGGAGCGTAT CCGGCTGGTC
GATTCGCGGG ATGGCGGGCA ATATCAAATC CCGGTAGCCG GTATCGGCTC AGCCAGTTTG
GTGCTCGATG TCAGTTTCGG TTTGCGTGAT GTCTCAAGCC CTGCCATTCA GCCCGACCGA
ATGGTGGCTG GCATTCTGAT GATGGGCATA TTGCTGCTTG CCCTGGGTTA TGTGTGGATC
CGCCGCAGTC TTGTGGTACC GCTTAATGGG CTCATGTCTC AGCTTGGCAA TATGGACCCC
AGTGCCAGCC GGTATCTTCC CCTCAGCGCC GATGGCTGCG CCGAAGTGCG GCATTTCTCC
CGGGTCAGCA ATAAGTTGCT GGCCGAAATT TTTGCCCAGA AAGAGCAGGC CAGGGTGATC
CTCGAAGGCA TTGCCGATGC AGTTATTCTT ACCGATGCCA AGGGGGATGT GCTCTACCTC
AATCCCCCCG CCTGCCGCTT GCTTGGTGGA CAGGCCGCGG ATTTTGCCGC GACTTCCGTC
AGCGGTATTT TGGGCATCAA ACCGTCGCTG CTGGACCGCT TTCTGAAAGA GCAGGGCCAG
GCGTGTAAAC AAATCTCCCT GCGCTTTGCC GGCCGCTTAC TGCAGTGCAC CCTGAGCGCC
ATCGAAGATC ACCAACACAC ACGCACCGGC GCCTTGTTGG CACTGCGGGA CGTGACTGCC
GAAGAGCGCT TGAAGTCCGA GCTCAGACGT CAGGCAGAAG AAGATGCGGT CACTGGATTG
CCCAATAGAA CCACCTTCGA GGCGCGAATG AAGCGGCTGG CGTCGGGGCA GGAAACCGTG
GCGTTGTGCT ATCTCGACCT CGAACAATTT AAAATCATTA ACGACAGCTG CGGTCATCTC
GAGGGCGATC GCATGTTGTG TATGGTGGCA AAGACCTTCC AATCCTGTTT GGCACCCGGT
GAATTGTTGG GGCGCGTCGG TGGGGATGAG TTTGGCATCT TGCTGTTGGG GCGCAGTGCC
CATGAGGTTG CCCTGCTGCT CAAAACCCTG CAGCAAAAAT TATCCATGCA GGTGCTCGAG
AGTCAGGGGC AATGTCATAG GGTCGGCGTC AGTATTGGGG TAGCTTTTGC CCGTGCGCCG
CTGCCCCCTG TGGGTGAGCT GTTCAAAGAT GCCGATATTG CCTGCGTAGC CGCCAAGCAG
AAGGGCAGCA ACCAAATTCA CTTCTACGAC GATAAAGACA AAGAGCTGAA TTATCAGCGT
AATGCACCCA AATGGGCACT GCGTATTGCC AAAGCTATCC ACAACCGGGA ACTGGAGCTT
TACTTTCAGC CCATACATTC ACTCCATGGC GGCAGCCCCC GCAAGCGGAT GGAAATTCTC
CTCAGGATCC GAGAGAGCAA TGGCCGCATC TTGCCGCCAG CGCAATTTAT TGCCTCGGCG
GAGCGCTTTA AGCTGATGCC GGAGGTGGAC AAGGCCGTGG TGTCCATGGC CATGGAGTGG
CTGGCGGCGC ATCCCAACTT TTGGCACGAC CATTGTCTTT CCATCAATCT GTCGGGCAAT
AGCCTGGGGG TGGAGGGCAT GGAATCCTTT ATCGTGGAAC AATTGCAGCG AAACGGCATC
CCTCCAGCCT GTATCTGTTT TGAAATCACT GAAACCACGG CTATTCAAAA TCGGCAAAGG
GCGTTGGATA TGCTCAGAAG CCTTAGAAAA CAGGGTTTTG CTTTTGCTAT TGACGATTTT
GGCAGTGGCT TCGCATCCTA TGGTTATTTG CGGGAATTGC CGGTGGACTA TGTGAAAATC
GACGGCTGCT TTGTTCGCCA GCTGGCCAGC AATGCCAAGG ATTATGCCAT TGTGAAGTCT
ATCCATGATG TGTGCAGCGT GATGGGGATA GAAACCGTGG CCGAATTTGT GGAAAGCCAG
GACATCATGG CGCGGCTCGA AGAAATCGGC ATTAATTATG CGCAGGGGTA TGCCGTGGGA
CGTCCAAAAC CCTTGAAAGA CTACGCGCCG TTTCCGTTGC GGCAACCGGC TTAA
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| Protein sequence | MHIGKKFLVF IAAFCIPAIL LVYWGMGLWF ERKASSFLEQ SIAHELANIN EQYQRSLRRQ
LLLSHIYAGP LSSLSPDAQA SMDSAWYEHT HALGLHFYRY SDAGLISFGV GNDYPLSPEM
VSALVNGTED VAVALLLDSG PLLITIITQG DSRVLVSRSL SEEELTRFGR SGFVERIRLV
DSRDGGQYQI PVAGIGSASL VLDVSFGLRD VSSPAIQPDR MVAGILMMGI LLLALGYVWI
RRSLVVPLNG LMSQLGNMDP SASRYLPLSA DGCAEVRHFS RVSNKLLAEI FAQKEQARVI
LEGIADAVIL TDAKGDVLYL NPPACRLLGG QAADFAATSV SGILGIKPSL LDRFLKEQGQ
ACKQISLRFA GRLLQCTLSA IEDHQHTRTG ALLALRDVTA EERLKSELRR QAEEDAVTGL
PNRTTFEARM KRLASGQETV ALCYLDLEQF KIINDSCGHL EGDRMLCMVA KTFQSCLAPG
ELLGRVGGDE FGILLLGRSA HEVALLLKTL QQKLSMQVLE SQGQCHRVGV SIGVAFARAP
LPPVGELFKD ADIACVAAKQ KGSNQIHFYD DKDKELNYQR NAPKWALRIA KAIHNRELEL
YFQPIHSLHG GSPRKRMEIL LRIRESNGRI LPPAQFIASA ERFKLMPEVD KAVVSMAMEW
LAAHPNFWHD HCLSINLSGN SLGVEGMESF IVEQLQRNGI PPACICFEIT ETTAIQNRQR
ALDMLRSLRK QGFAFAIDDF GSGFASYGYL RELPVDYVKI DGCFVRQLAS NAKDYAIVKS
IHDVCSVMGI ETVAEFVESQ DIMARLEEIG INYAQGYAVG RPKPLKDYAP FPLRQPA
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