| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0383 |
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| Symbol | |
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| ID | 4602639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 474348 |
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| End bp | 475742 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639779720 |
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| Product | ATP-dependent RNA helicase RhlE |
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| Protein accession | YP_926264 |
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| Protein GI | 119773524 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.814005 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATTTG CCCGTCTGGG ATTAGCTCCC GCCATTACTT CGGCACTTGA GTCGCTGAAC
TATCAACAGC CCACCGAGAT CCAGCAAAAG GCGATACCGG TAGCCTTAAG TGGTCGCAAT
CTGCTGGCCG CAGCTCAAAC CGGAACGGGC AAAACCGCAG CATTTGGACT GCCGCTGATT
GAACGCCTAA GCCAGGGCAA GACCGAACGG AAAAAACGGG TACGGGCGGT GATTTTGGCG
CCAACCCGGG AGTTAGTGGT GCAGGTGGCT GACAATCTGA GCGCCTACGC GGCGAACTTG
CCGCTGACCG TGCTGGCCAT GTATGGCGGT GTGGATATGC AGGCCCAAAA GCAGGCGCTG
ATTGCGGGCG TGGATATTCT GGTGGCGACG CCAGGCAGAC TCAAAGACAT GTACCATCAG
CGTGCCGTGT ATTTTGAAGA AATCCAGGTG CTGGTGCTGG ATGAGGCCGA CCGCATGCTG
GATATGGGCT TTATTGAGGT CATTAACGAC CTTATCAGCC GTATGCCCAC GAACCGCCAG
AATCTGCTGT TTTCGGCAAC TTTATCCCCG CGCATTCGCG AGCTGGCCAA AACCGCGGTG
CCGGATCCGG TCGAAATTGC CATTGCCAAG CCCAGCAAAA AAGAGATTTC CCAGTGGCTG
GTGACGGTCG ACAAGGACAC CAAGTCGGCC CTCCTGAGCC ATCTTATCCA AACGGAACAA
TGGCAGCAGG CGCTGATTTT CATTGAAACC AAACATGGCG CGGCCAAGTT GGTCAGCCAG
CTGGAAAAGC GTGGCATTCA CGCCGAAGCC TTTCACAGTG GCCGCAGTCA GGCGGTGCGT
GAACAGGTGT TGAGTGAATT TAAAGACGGC AGTTTGCAGT ATCTGGTAGC CACCGGCGTG
GCCGCCCGGG GGATTGATGT CGATAAACTG GAGCGGGTAG TGAACTACGA TCTGCCATTC
CCGCCGGATG AATATATTCA CCGTATCGGT CGTACCGGCC GCGCGGGCAT GACAGGGGAA
GCGGTATCTT TACTGTCAAA AGATGATTTC AAGAATCTGT GTATGATTGA AAGCCGTCTG
GGGCATGTGA TTGAAAGGCG GGTGATTGAG GGATTTGAGC CCAAAAAGCC TATCCCTGTG
TCTATTCTCG ACTATAAGCC CAAATCTCAG CCAAAAGCTC AGCCCAGCTC TGAGCTCAGC
CCTCAACGCA ACTCTCAGCC CAGCTCTCAA CGAAAGTCGC GCACAGAAAA GCTAAGGGCA
AGCGAAGGCG GCACTGCTGC CAAAAGCCCT TGGGCAGCGG CGCAACGAAA AAAACCTGCA
AACCCACGGC ATGGAACCAG CGCCGCCAGA TCAGGGCCAC CAAAGGGCAA GGACTCAGGC
AAGCCACGGG GCTAA
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| Protein sequence | MSFARLGLAP AITSALESLN YQQPTEIQQK AIPVALSGRN LLAAAQTGTG KTAAFGLPLI
ERLSQGKTER KKRVRAVILA PTRELVVQVA DNLSAYAANL PLTVLAMYGG VDMQAQKQAL
IAGVDILVAT PGRLKDMYHQ RAVYFEEIQV LVLDEADRML DMGFIEVIND LISRMPTNRQ
NLLFSATLSP RIRELAKTAV PDPVEIAIAK PSKKEISQWL VTVDKDTKSA LLSHLIQTEQ
WQQALIFIET KHGAAKLVSQ LEKRGIHAEA FHSGRSQAVR EQVLSEFKDG SLQYLVATGV
AARGIDVDKL ERVVNYDLPF PPDEYIHRIG RTGRAGMTGE AVSLLSKDDF KNLCMIESRL
GHVIERRVIE GFEPKKPIPV SILDYKPKSQ PKAQPSSELS PQRNSQPSSQ RKSRTEKLRA
SEGGTAAKSP WAAAQRKKPA NPRHGTSAAR SGPPKGKDSG KPRG
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