Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0379 |
Symbol | |
ID | 4602635 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 464790 |
End bp | 466994 |
Gene Length | 2205 bp |
Protein Length | 734 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639779716 |
Product | hypothetical protein |
Protein accession | YP_926260 |
Protein GI | 119773520 |
COG category | [R] General function prediction only |
COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.101428 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.24493 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGAAAC TTCTGTCACT GCTGCTGTTA TTTCCTCTCT CTCTTGCCCA GGCGGCAGAC CGTCCCAAGG TGGGCCTGGT CCTCAGTGGT GGTGGAGCCA AAGGCGCTGC GCATGTAGGT GTGCTCAAGG TGCTGGAAGA GCAAAACATT CCGGTTGATT ACGTCGCCGG TACCAGCATC GGGGCTTATG TGGCCGGTAT GTATGCCCTC GGTTACAGCG CCAGCGAAAT TGAAGCCATC ATGATGAATG TGGATTGGAA CAGGGGTTAT TCGGATACCA TCCCCCGGGA GGCACTTAGC TATCGCGACA AGCAGCTCAG GGACAAGTAC AACATACCGC TGAATATCGG CTACGCAGAT GCAGAAGTGA AAGCCCCCAG CGGCGTACTC CGGGGCCAGA CCATGTCGCT ATTACTGCGT GAGTCAACCG ATGTGGTCCG TGAATTTACC AGTTTCGATG AACTCGCTAT TCCCTACCGT GCCGTTGCCA CCGATTTGGC CACCAGTCAG CCGGTTATCT TATCCGGCGG CAGTGTCATC AAGGCGATGC AGGCATCGGC CACCGTGCCC GGTGCATTGC AGCCCATGTT GATTGATGGA CGCTTGCTGG TGGATGGCGG TATCGCCAAT AACATGCCGG TGGATGTGGT CAAAGCCATG GGCGCCGATG TCGTCATAGC AGTGGACATA GGCTCGCCAC TGGTGGGCAA TGAGGAGCTC GATAGCACAA TCGCGGTGCT GAACCAGTTG TCTACCATGT TGACTGCAGC CAGCACCGAG GCGCAGAAGA AATTGCTGAC CGAGAAAGAT GTGCTTATCC GTCCGGCCAT CGATGCCCTC AGTACCACAG ATTTCAGCAT CATGAGTACC GCATTGTCTT TGGGGGAAGA GGCGGCAAGG GGGCAGCTCG CGCAGCTTCA GGGCCTGGGC ATTGAGGCGC AGCAATACGC AGATTATCAG CAGAGCAAGC GGGGCAGGTC CAAGGTGTGG CTGGATGACA TGCAGCGTCC TGTAGTCGAC ATTGTCTATG ACAATCACTC CAGAGTCAGC GAAAGCCTGC TGGAAGATAC GCTGGGCATC AAGCCCGGAC AGGTTGTGAA ACGCGAAGAT CTGGAAGCGG GAGTGAATCA GCTATACGCC CTGAACCGAT TCGAGCGGGT GGATGCCGAA TTTACTGACA CGCCAGAAGG ACGGGTACTG ACAGTCTCCA CCAAGGCCAA GTCATGGGGC CCCAACTATT TTGATTTGGG CTTTAACTGG GAAGACGACT TTACCGCCGA CTCCGCTGTG ACCCTGGATA CTGCCTACAC CATGACCAAT CTCAATGAGA ATGGGGGAGA GTGGCGCAAC GAGCTGAAAC TTGGTTACGA AAAGTTGCTG GGTACCGAGT TTTACCAGCC ACTGGACCGC GATCAGGAAT TCTATGGCCG TGCCCGCTAT CAGTATGAAA TTACCGCATG GGAACTCTTC GACGCCAATA ACAAGGTGTT TGAATTCGAT AAAGACTCTC ACCGAATCGA CATGGGGCTG GGGCTTAATT TTGCCCAGCT GGGCCAGCTT GAGCTGGGTG TCACAGGTGA AAAGGGCAAA ATTTCCAACG AGGCACTGCT AACAGAGGAC TTAACGTTTT CATCCTATGG CGGTTATTTC CAGATTGGTT ACGACAGCCT CAACAGCATC AGCTTCCCCA CGTCCGGCAA CAGGGTCACG CTGCGCGTCA CTGTGCGCAA GGAAGACTAT GACATAGACG ACTATGAGCT GGAATCCAGT ACTCAGGTTC AGGCCGATTG GAAAGGGGCT TTGGGCGTTG GTAACCATGC CTTTGTGGGC AAGGTGTCAC TGGAATCCTC GGACAACGAC GGCGAGTCCT ATGTGCACCT TGCCGAACTC GGCGGGTTTT TGAACCTGTC GGGCTATCGA AAAGACTCCC TGGTGGGAGC CCACAAGGTC TTTGGTGCCT TTGTGTATCA ATACGACCTG GGGCGTGATG CCCTCGGCAT GACGGACTAC CCCCTCTATC TGGGTGCCAG TCTTGAGGCC GGTAACGTCT GGTGGGAGAT GGACGAAGTC TCTCTGCAGG ACTTGATATA TGCCGGCAGC CTTTACATAG GTACGGATAC CGATCTTGGC CCCGCAGCCC TGGGTATTGG TCTTACCGAT GATGGCCAGC GCTCCTTCTA CCTGTTTGTT GGAAAGAATT TTTAG
|
Protein sequence | MKKLLSLLLL FPLSLAQAAD RPKVGLVLSG GGAKGAAHVG VLKVLEEQNI PVDYVAGTSI GAYVAGMYAL GYSASEIEAI MMNVDWNRGY SDTIPREALS YRDKQLRDKY NIPLNIGYAD AEVKAPSGVL RGQTMSLLLR ESTDVVREFT SFDELAIPYR AVATDLATSQ PVILSGGSVI KAMQASATVP GALQPMLIDG RLLVDGGIAN NMPVDVVKAM GADVVIAVDI GSPLVGNEEL DSTIAVLNQL STMLTAASTE AQKKLLTEKD VLIRPAIDAL STTDFSIMST ALSLGEEAAR GQLAQLQGLG IEAQQYADYQ QSKRGRSKVW LDDMQRPVVD IVYDNHSRVS ESLLEDTLGI KPGQVVKRED LEAGVNQLYA LNRFERVDAE FTDTPEGRVL TVSTKAKSWG PNYFDLGFNW EDDFTADSAV TLDTAYTMTN LNENGGEWRN ELKLGYEKLL GTEFYQPLDR DQEFYGRARY QYEITAWELF DANNKVFEFD KDSHRIDMGL GLNFAQLGQL ELGVTGEKGK ISNEALLTED LTFSSYGGYF QIGYDSLNSI SFPTSGNRVT LRVTVRKEDY DIDDYELESS TQVQADWKGA LGVGNHAFVG KVSLESSDND GESYVHLAEL GGFLNLSGYR KDSLVGAHKV FGAFVYQYDL GRDALGMTDY PLYLGASLEA GNVWWEMDEV SLQDLIYAGS LYIGTDTDLG PAALGIGLTD DGQRSFYLFV GKNF
|
| |