| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0378 |
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| Symbol | |
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| ID | 4602634 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 460211 |
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| End bp | 464686 |
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| Gene Length | 4476 bp |
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| Protein Length | 1491 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639779715 |
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| Product | sensory box protein |
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| Protein accession | YP_926259 |
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| Protein GI | 119773519 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0214422 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAAAAA AAGTTGCTCA ATCTCTGCTG CTGATATTCG CACTTCTGCT GCCTTGGCTG
CACGTCAGTT ATGGCGGTGA ATTTGTGCAG CGGATTTTTG CCAGTCGCGA CGGCCTCTCC
AATGGCATGA TTAACGCTAT CGCCTTTGAT TCTTACGGGT TTGTCTGGGT CGCCACCGAA
GATGGCCTGT TTCGGATCAG TAAAACCGTG GCGCGCAGGG TAGACACCCA GCAAGGTGAA
AACCGCCTTA ATGATTCATA CATAATGGAT GTGGTGGCAC TGGGGCAGGA GTATCTGCTT
GTCAGCGTAT CTGACTCGCT TTATCGCTAC CATATTCCCT CAGATACCTT CGAAGAAATC
GGCAGTGAGT CTCTATTTCC CGAATACGAG GGTGGCGGGA TTATTGATCG CACCGTCGTC
GACCAACACT CCTTGATGTT GCTCAACAGC AAAGGGCAAA TCCTGAAGCT GGACCACCAC
AGCTGGCAAT TGGAGAAGGT TATTCAACTG CAGCAGGACC CCGATTTACT CTGGGACAAA
CTGCTCTATC TTCCCTCTGG GCAACTCATC ATTGGTAAGA GCGACCATCT TGAAATTCGT
TCTGCTCAGG GTGAAAAGCT GGTTGATTTA CCCTGGGTTG AGGCATCGGG TCAGGCCAAA
CGTCTCTTCC GCGACAGGGC CGGGAGGGTG TGGCTGACGG CAAGCGAAGG CCTGTTTGAA
GTGCTGCCCG ACACACAGCA GATTTTGCCT GTGCCCCAAG TGCCCTTTTA TGTCACTGCC
ATTAACGAAG ATGGCAAGGG TAACCTGTGG ATGGCGAGTA GCTCCGGGGC GCTGAAGTGG
TCTCCGGTCG ATCAGACTTT AGAAAAGTTC GACAGCGATC TGCGTCAGTT TGCCAATATT
GACTCCGTAC AGGATGTCGC CATTGATAAT CAGGGCTTAA TTTGGTTGGG CGGCGCCGGT
GAGGGGCTGG TACTTGCGGC GGATAAGCCC AGCTTCCTGA GGGGTACCTT TACTGATCAG
CCACCCTATT CACTGGGAAA CCAGATGATT TGGTCCATTT TCACCGAGGG CGATCGCTAT
TGGTTAGGTA CTGATGCAGG CGTTGTCAGT GTCCAGGATG GGGTAGCTGG TTCGGTGCTA
AGCACACCGG AAGAGTTTGA GCCCAACGAC ACCGTCTACG CTATTACCTC ACTGAGTAGT
GAATACCTGC TGCTTGCCAC CACCAATGGC CTGTTTTTGC AGCATAAAAC CACGAATCTG
ACTAAGCGGT TCCATGAGTG GAGCAGCGGC AGCGATTCAC TTAAGCGCAA GTGGATATAT
CAAGTTTACA AGGATCCCGG GATCCCGGGG CGACTGTGGT TCCTAACTTC CACCGGCTTG
TTCTATTGGG AGCCAGGCCT GTTTGACCCC CAGGAATATG CCATTGTGAG CCGCAGTGGT
GAACGCCACC AACCCGCGAT TTACAGCATG CTGAGGGGGG CGGATGGCAA GCTGTGGCTG
GGTGGCCCCG ATGAATTCGG TTATCTGGAT GCTGATGGTT ACTTCATCGA TAAGCGTGAG
CTGTTCAGCG GGAAGCGGGG AGATTTGCTT GTAGGGCATA TCCTGGAAAT CGCACCCGGT
AAGCTGTGGT TGGGGACATC CTTGTTTGGG GTGGTGGAAT ACCAGGTCAA CACGGATACC
CTGACGTCAT TGCAGGACAG GTGGAAACTC AGTTGCTACA CCACCTATGG TCTGATCGAT
ACACCGGATT ATCGTGTGAT TCTTTGTCCT CGCTCCTTGG TGCGAGAGCA CAAAGGGACG
TCCGAAGTAC AGGTGTTTAC CGTTGAAGAT GGCGTGGTCA ATAACGAGTT TAACGACGGC
GCCTATGCCT ACCGTGAGGA TAAGGGACTG TTTCTGGGCA GCCCCAACGG GGTGCGTTTG
CTGGACGTTA ATGGCCTGAA AAATCGCATC ACTGACGAAC GGGTATTTCT GGAGTCGGTG
ACGGTTTTTT ATGATAGCCA CACCGAAAAA TCCCTGGTGC CGAGCGACTT GACCATGGTT
GAACCCGGCG CCCGGATGAT TAGTTTGCAG CTGACCAGTA ACGACTTTTT GGATGATTCA
CCCATTAGGC TTAAATACCG CCTTGGCAAG CAGGGGCAGT TGGTGGAACC CAAGTACCTG
CTGCTGGATG GCCAGCCTCA GCTCAACCTC TCGGGGTTGG ATGCCGGTAA GCTGGAACTT
GAGATCCTGA GCCTTCGCAA TCAAATCTGG AATGACACGC CCTATATCCA CCGTCTGCAT
GTGCAGCAAT ATTGGTGGGA GACGGCGCTG TTTAAATGGT CGCTGATAGT GATCCTGATG
TTGTTAACCC TGGCCATCAT TCTGATACGA CATCGACAGG TAGAACGTTT TCGTCATATG
AACACGGCGC TGCTTGAGAG TGAAGACAGG CTGCGCCAGT CGCTGCGCGG CAGTGATTCG
GATCTCTGGA TGTGGACCCG CAAAGATAAC GCCTTTTATA TGGATAACCG CAATGGCGTG
TTATCGGTAG AGCAGCAAGT CTTAAAGGTC AATTTTGAAG AGTTTCCAAT CCACCCGGAC
GACAGAGACA GGGTGGTGTC CCACTGGCTG GCGGTGATCA ATGGTGAGAT TGAGCGTTTC
GAAGCTGAAT ACAGATTCCA GCGACGCACT GGCACCTGGG GATGGCTCAG GGTGCGGGGA
CGCCCCAGTC AACTGAACAA AGAGACGGGT GAAGTTGAAA AAATCAGTGG TATCTACAGT
GATATCACCC AGCACAAGTT GCTGCAGAAC GAAGTCGACC TCTTGGCACA GGCGTTTGAA
AACACGTCTG AAGGTGTGCT TATTCTCGAC GCCGATGAGC AAATCAAGGT CGCCAACCGG
GCAGCTCAAT CCATTTTGGG CGCTGGCATG GCAGAACTTG CCGGCCGCAA ATTTATTGCA
CTGCTTACTG AACACGGCAC TAATCGCAGT GAGATAGCGA CCCTGCTGGC CAATGGCATG
AGTTGGACCG GCGAACGTGA GCTGCGGATC GGGTCCGGGC AGGTGTGCCC GGTGTGGCTT
AACGTTTCAG TGATGTTGGG GCTGCAGGGC AAGGTACAGC ACTATGTGGT GGTGTTTTCG
GATATTACTG AACGTAAGCG CAGCGAAGCC GACTTACGCC GTCTTGCCAA CTACGATGTG
CTGACCGGTT TGCCCAATCG CTCCCTGTTT GCCGCCAGAT TGAATCAGGC CATTCACAAG
GCGACCCAGA ATGAAGAAAA GCTGGCCTTG ATGTTCCTGG ATTTGGACAG ATTCAAGCAC
GTTAACGATT CTTTTGGTCA TGGCATGGGT GACGCGCTTT TGGTGGAAGC GGCGGCGAGG
CTGCAATCTT GCATCGACCC TGAATACACC CTGTGCCGTT TTGGTGGCGA TGAGTTTGTG
GTTTTAATTC ACGGTGCTGA GGTCGATACC CTGAATCATC TCGCCAATAC CATTCTTGGC
CAAATCGAAA CGCCATTTAA ACTCTTTGGC CGCGAGTTCT ACATCTCCAC TAGTATTGGG
ATTTCAATCT GGCCGGATGA TGCCCGCCAG CCCGAGGCCT TGATCAAAAA TGCTGATTTG
GCCATGTATC ATGCCAAAGA AGAAGGGCGC GGTAACTTCC AGTATTACTC TCAGGAGCGT
AATGCCGAGG CGCTTTATCA CCTGCGTTTG GAGGCTGATT TACGTAAGGC GCTGGAGCGG
CAGGAGTTTT GCCTGCATTA CCAGCCGCAA GTCGATGTGA ATGATGACAA TCAGGTCATA
GGGATGGAAG CCTTATTGCG TTGGCAACAT CCCAAAGATG GCTACATCCG AACCGACATT
TTCATCAAGG TGGCCGAAGC CTGTGGCCTG GTCATCGACA TCGACAAGTG GGTGTTGCGT
CAGGCTTGTT TGGATGGCGC CCGCTGGAGC CGTAAACTTA AACGCCCCTT TAAAATCTCG
GTCAACATCT CTGCCGTGCA TTTCCGTCAG CCCGATTTTA TCGACCATTT GCGCCGCACC
CTCGAAGAGA CATGTATTCC GGTAGAAAAC CTGGCGCTGG AAATTACCGA AGGCGTGTTG
ATGAAAGAGC TGCATATTGC CCGCGATCAC TTGCGCCTGC TTCGGGAAAT GGGAGTGCAG
GTTGCCATTG ATGACTTTGG TACCGGCTAT TCGTCGCTGG CTTATCTGCG CCACTTCGAC
GTGAATCTGC TCAAGATTGA TCGCTCCTTT CTGATAGATA TCGCCGACAA TCAGGCGGAT
CAGGCGATAG TCTCCAGTAT TATCGAGCTG GCCCGCAACC TGAAACTCAA GGTGGTGGCA
GAAGGCGTTG AAACCCGTGA ACAGCTCAAT CAGGTGTTGT CCCGGGGTTG TCATGTGATT
CAGGGCTACT ACTTTGCCAA GCCTATGGCC CGTGACGATA TGGATGCCTA TTTGATGCTG
GATGGACCGG CATCGGCTTC CCCCGATCAG GTCTGA
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| Protein sequence | MIKKVAQSLL LIFALLLPWL HVSYGGEFVQ RIFASRDGLS NGMINAIAFD SYGFVWVATE
DGLFRISKTV ARRVDTQQGE NRLNDSYIMD VVALGQEYLL VSVSDSLYRY HIPSDTFEEI
GSESLFPEYE GGGIIDRTVV DQHSLMLLNS KGQILKLDHH SWQLEKVIQL QQDPDLLWDK
LLYLPSGQLI IGKSDHLEIR SAQGEKLVDL PWVEASGQAK RLFRDRAGRV WLTASEGLFE
VLPDTQQILP VPQVPFYVTA INEDGKGNLW MASSSGALKW SPVDQTLEKF DSDLRQFANI
DSVQDVAIDN QGLIWLGGAG EGLVLAADKP SFLRGTFTDQ PPYSLGNQMI WSIFTEGDRY
WLGTDAGVVS VQDGVAGSVL STPEEFEPND TVYAITSLSS EYLLLATTNG LFLQHKTTNL
TKRFHEWSSG SDSLKRKWIY QVYKDPGIPG RLWFLTSTGL FYWEPGLFDP QEYAIVSRSG
ERHQPAIYSM LRGADGKLWL GGPDEFGYLD ADGYFIDKRE LFSGKRGDLL VGHILEIAPG
KLWLGTSLFG VVEYQVNTDT LTSLQDRWKL SCYTTYGLID TPDYRVILCP RSLVREHKGT
SEVQVFTVED GVVNNEFNDG AYAYREDKGL FLGSPNGVRL LDVNGLKNRI TDERVFLESV
TVFYDSHTEK SLVPSDLTMV EPGARMISLQ LTSNDFLDDS PIRLKYRLGK QGQLVEPKYL
LLDGQPQLNL SGLDAGKLEL EILSLRNQIW NDTPYIHRLH VQQYWWETAL FKWSLIVILM
LLTLAIILIR HRQVERFRHM NTALLESEDR LRQSLRGSDS DLWMWTRKDN AFYMDNRNGV
LSVEQQVLKV NFEEFPIHPD DRDRVVSHWL AVINGEIERF EAEYRFQRRT GTWGWLRVRG
RPSQLNKETG EVEKISGIYS DITQHKLLQN EVDLLAQAFE NTSEGVLILD ADEQIKVANR
AAQSILGAGM AELAGRKFIA LLTEHGTNRS EIATLLANGM SWTGERELRI GSGQVCPVWL
NVSVMLGLQG KVQHYVVVFS DITERKRSEA DLRRLANYDV LTGLPNRSLF AARLNQAIHK
ATQNEEKLAL MFLDLDRFKH VNDSFGHGMG DALLVEAAAR LQSCIDPEYT LCRFGGDEFV
VLIHGAEVDT LNHLANTILG QIETPFKLFG REFYISTSIG ISIWPDDARQ PEALIKNADL
AMYHAKEEGR GNFQYYSQER NAEALYHLRL EADLRKALER QEFCLHYQPQ VDVNDDNQVI
GMEALLRWQH PKDGYIRTDI FIKVAEACGL VIDIDKWVLR QACLDGARWS RKLKRPFKIS
VNISAVHFRQ PDFIDHLRRT LEETCIPVEN LALEITEGVL MKELHIARDH LRLLREMGVQ
VAIDDFGTGY SSLAYLRHFD VNLLKIDRSF LIDIADNQAD QAIVSSIIEL ARNLKLKVVA
EGVETREQLN QVLSRGCHVI QGYYFAKPMA RDDMDAYLML DGPASASPDQ V
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