| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0375 |
|---|
| Symbol | aceE |
|---|
| ID | 4602631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 453823 |
|---|
| End bp | 456519 |
|---|
| Gene Length | 2697 bp |
|---|
| Protein Length | 898 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639779712 |
|---|
| Product | pyruvate dehydrogenase subunit E1 |
|---|
| Protein accession | YP_926256 |
|---|
| Protein GI | 119773516 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2609] Pyruvate dehydrogenase complex, dehydrogenase (E1) component |
|---|
| TIGRFAM ID | [TIGR00759] pyruvate dehydrogenase E1 component, homodimeric type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00106725 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAC CTATGCAAAT GCTACAAGAC TTAGATCCCA TCGAAACCCA GGAGTGGCTG
GCGGCCCTCG AGTCCGTTGT TCGCGAAGAA GGCGTCGAAC GTGCCCAATT CCTGCTGGAG
CAAGTGTTGG AGCAGGCCCG TCTTGATGGT GTGGACATGC CAACCGGCAT CACCACCAAC
TATGTGAACA CCATCCCCTT GACTCAGGAA CCGGCTTACC CTGGTGATAT CACCATTGAA
CGCCGCATCC GTTCCATCAT TCGCTGGAAC GCCATCATGA TAGTACTGCG CGCCTCCAAG
AAAGATCTGG AGCTGGGTGG TCACATGGCG TCTTTCCAGT CGGCGGCTGC TTTCTACGAA
GTGTGTTTCA ACCACTTTTT CCGCGCCCCC AACCACAAAG ATGGTGGCGA CCTGGTTTAC
TATCAGGGCC ACATTGCCCC CGGTATTTAT AGCCGTGCTT TCCTCGAAGG TCGTCTGACC
GAAGAGCAGC TGGACAACTT CCGTCAGGAA GTGGACGGCA AGGGTATTTC GTCTTACCCA
CACCCCAAGC TGATGCCTGA ATTCTGGCAA TTCCCAACCG TATCCATGGG TCTGGGCCCT
ATCTCTTCTA TTTATCAGGC ACGCTTCCTC AAGTACCTGA ATGGCCGTGG ACTGAAAGAC
ACCACCGAGC AGCGCGTGTA CGCCTTCCTC GGCGATGGTG AAATGGACGA GCCGGAAAGC
CGCGGTGCTA TCTCCTTCGC TGCCCGTGAG AAGCTGGACA ACCTGTGCTT CCTCATCAAC
TGTAACCTGC AGCGTCTCGA CGGCCCGGTA ATGGGTAACG GCAAAATTAT CCAGGAACTC
GAAGGCCTGT TTAAAGGCGC GGGCTGGAAC GTAATCAAGG TAGTGTGGGG CAGTGGCTGG
GACAAGCTGC TGGCCAAAGA CACCACCGGC AAGCTGCTGC AGCTGATGAA CGAAACCGTT
GACGGTGACT ATCAGACCTT CAAGGCCAAA GATGGTGCCT ACGTGCGTGA GCACTTCTTC
GGTAAGTACC CAGAGACGGC TGCTCTGGTT GCCGACATGA CCGACGAAGA AATCTTCGCC
CTAAAGCGCG GTGGCCATGA GCCTTCCAAG CTGTACGCGG CATTCAAAGC TGCCCAGGAG
ACCAAGGGGC GTCCAACTGT GATCTTGGCC AAGACTGTAA AAGGTTACGG CATGGGCGAT
GCGGCCGAAG GCAAGAACAT CGCGCACCAG GTGAAAAAGA TGGACATGTC CCACGTGGCC
AAGCTGCGTG ACCGTCTGGG TGTGACGGAT CTGGTCAGCG ACGAAGATCT GGTTAATCTG
CCATACATCA AGCTCGAAGA AGGCAGTGTT GAGCACACCT ATTTGCACGC CCGTCGTGAA
GCCCTGCACG GCTACACGCC CAAGCGTCTG CCTAACTTCA CCGGCGAGTT TGTTGCCCCT
GAACTGTCTG AGTTCAAGCC GCTGCTGGAA GAGCAGAAGC GTGATATTTC TACCACCATG
GGCTTTGTTC GTACCCTGAA CATCCTGCTC AAGGACAAGA ATATCGGCAA AAACATCGTG
CCTATTATCG CCGACGAAGC CCGTACCTTC GGTATGGAAG GTCTGTTCCG TCAGATTGGT
ATCTATAACC CCTACGGCCA GAACTACATT CCGGAAGACC GCGATATCGT GTCTTACTAC
AAGGAAGACA CTTCAGGCCA GGTACTGCAA GAAGGTATCA ACGAGCTGGG CGCCATGTCT
TCATGGGTTG CCGCTGCCAC CTCGTACAGC ACCAACAACC TGCCAATGAT CCCGTTCTAC
ATCTACTACT CCATGTTCGG CTTCCAGCGT GTGGGCGATA TGGCGTGGAT GGCAGGCGAC
CAGCAGGCGC GCGGCTTCCT TTTGGGTGCC ACTGCCGGTC GTACCACCTT GAACGGTGAA
GGTCTGCAGC ACGAAGACGG TCACAGCCAC ATCCTGGCCG GTACCGTACC TAACTGTATT
TCTTACGATC CGACCTTTGC TTACGAAACT GCCGTGATCA TTCAGGACGG TATCCGCCGC
ATGTATGGCG AGCAGGAGAA CGTGTTCTAC TACCTGACCC TGATGAACGA AAACTACGCC
ATGCCAGCCA TGCCAGAAGG TGCCGAGGAA GGTATCCGCA AGGGTATCTA CAAACTCGAA
AGCCATACAG GTGGCAAGGG CAGTGCCTAC AGCCCAGCGA AGCCATCAAA AGTGCAGTTG
ATGAGCTCAG GCACCATCAT GAATGAAGTA CGTAAAGCCG CGGTTATCCT GGCTGAAGAA
TACGGCATAG GTTCAGATGT GTTCTCCGTG ACTTCGTTCA ACGAGCTGGC CCGTAACGGT
CAGGACTGCG AGCGTTTCAA TATGCTGCAT CCTGAAGCTG ACGCCCGCGT ACCTTACATC
ACCTCAGTAC TGGGCAGCGA GCCTGCCATT GCCGCGACCG ACTACATGAA GAACTACGCC
GAACAGGTTC GTGCCTTCAT GCCAAGCGTG TCCTACAAGG TGCTGGGTAC CGACGGTTTC
GGTCGCTCTG ACAGCCGCGC CAACCTGCGT CGTCACTTCG AAGTGAACGC CGGTTACGTG
GTGGTTGCAG CCCTGAACGA GCTGGCCAAG CGCGGTGACA TCGAGAAATC TGTGGTGGTT
GCTGCCATCA AGAAGTTCGA TATCGACACC GAGAAGATGA ACCCACTTTA CGCGTAA
|
|---|
| Protein sequence | MSEPMQMLQD LDPIETQEWL AALESVVREE GVERAQFLLE QVLEQARLDG VDMPTGITTN
YVNTIPLTQE PAYPGDITIE RRIRSIIRWN AIMIVLRASK KDLELGGHMA SFQSAAAFYE
VCFNHFFRAP NHKDGGDLVY YQGHIAPGIY SRAFLEGRLT EEQLDNFRQE VDGKGISSYP
HPKLMPEFWQ FPTVSMGLGP ISSIYQARFL KYLNGRGLKD TTEQRVYAFL GDGEMDEPES
RGAISFAARE KLDNLCFLIN CNLQRLDGPV MGNGKIIQEL EGLFKGAGWN VIKVVWGSGW
DKLLAKDTTG KLLQLMNETV DGDYQTFKAK DGAYVREHFF GKYPETAALV ADMTDEEIFA
LKRGGHEPSK LYAAFKAAQE TKGRPTVILA KTVKGYGMGD AAEGKNIAHQ VKKMDMSHVA
KLRDRLGVTD LVSDEDLVNL PYIKLEEGSV EHTYLHARRE ALHGYTPKRL PNFTGEFVAP
ELSEFKPLLE EQKRDISTTM GFVRTLNILL KDKNIGKNIV PIIADEARTF GMEGLFRQIG
IYNPYGQNYI PEDRDIVSYY KEDTSGQVLQ EGINELGAMS SWVAAATSYS TNNLPMIPFY
IYYSMFGFQR VGDMAWMAGD QQARGFLLGA TAGRTTLNGE GLQHEDGHSH ILAGTVPNCI
SYDPTFAYET AVIIQDGIRR MYGEQENVFY YLTLMNENYA MPAMPEGAEE GIRKGIYKLE
SHTGGKGSAY SPAKPSKVQL MSSGTIMNEV RKAAVILAEE YGIGSDVFSV TSFNELARNG
QDCERFNMLH PEADARVPYI TSVLGSEPAI AATDYMKNYA EQVRAFMPSV SYKVLGTDGF
GRSDSRANLR RHFEVNAGYV VVAALNELAK RGDIEKSVVV AAIKKFDIDT EKMNPLYA
|
|---|
| |