Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0374 |
Symbol | pdhR |
ID | 4602630 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 452998 |
End bp | 453750 |
Gene Length | 753 bp |
Protein Length | 250 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639779711 |
Product | transcriptional regulator PdhR |
Protein accession | YP_926255 |
Protein GI | 119773515 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.783921 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000643873 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCATATA GCAAAATAAA CCAGCCGAAG ATCTCCGATG TGATCATGCA GCAACTCGAG CGCATGATCC TTGAAGGCAG TCTCAAGCCC GGCCAAAAAC TGCCCCCTGA GCGGGAGTTG GCCATTCAAT TTGAAGTTTC CCGTCCTTCC CTGCGCGAAG CCATCCAGAA ACTGGAGGCC AAAGGCCTGC TGATGCGTCG CCAGGGCGGT GGTACCTACG TGAAAGAGCA GCTGTGGCAA AGCATGGCCG ACCCTATCGT AGAGCTCATG CAGAGCGACA CCGAGAGCCA GTACGACCTG CTTGAATTCC GTCATGCCAC CGAAGGCATG ATGGCGTACT TTGCCGCGCT GCGCGGTACA GATGCCGACA TGAATAACAT CCAAAAAATG ATTTTGGAAG TGGAAGAGGC CCAAACTATC GAAAGTAAGG CCGATGCCAT CGTGCGTTTT TATCGCGCCG TGGCCGAAGC CTCCCACAAT GTGGCCATGT TACATCTGGT TTTAAGTTTA ACTCCGGTGC TGCACAAGAA TGTGGCACAA AACCTGGAGC TTCTGAGCCG CCGCGAAGAT GCCTCCAGAA TGGCGAACGA ACACCGCCGG GCACTGCTCG CCGCTATAGT TCGCCGCGAT CCCGAAGCGG CCCGCGAAGC CTCGAATGAG CACTTGAGCT ACATCGAAGA GGTGATGTTG GCGGTCAGGG AAGAAGATAG CCGGTTGCAG CGCAGCCTGC GCCGATTAAA GAGTGGCGCC TGA
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Protein sequence | MAYSKINQPK ISDVIMQQLE RMILEGSLKP GQKLPPEREL AIQFEVSRPS LREAIQKLEA KGLLMRRQGG GTYVKEQLWQ SMADPIVELM QSDTESQYDL LEFRHATEGM MAYFAALRGT DADMNNIQKM ILEVEEAQTI ESKADAIVRF YRAVAEASHN VAMLHLVLSL TPVLHKNVAQ NLELLSRRED ASRMANEHRR ALLAAIVRRD PEAAREASNE HLSYIEEVML AVREEDSRLQ RSLRRLKSGA
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