Gene Sama_0374 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0374 
SymbolpdhR 
ID4602630 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp452998 
End bp453750 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content56% 
IMG OID639779711 
Producttranscriptional regulator PdhR 
Protein accessionYP_926255 
Protein GI119773515 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.783921 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000643873 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCATATA GCAAAATAAA CCAGCCGAAG ATCTCCGATG TGATCATGCA GCAACTCGAG 
CGCATGATCC TTGAAGGCAG TCTCAAGCCC GGCCAAAAAC TGCCCCCTGA GCGGGAGTTG
GCCATTCAAT TTGAAGTTTC CCGTCCTTCC CTGCGCGAAG CCATCCAGAA ACTGGAGGCC
AAAGGCCTGC TGATGCGTCG CCAGGGCGGT GGTACCTACG TGAAAGAGCA GCTGTGGCAA
AGCATGGCCG ACCCTATCGT AGAGCTCATG CAGAGCGACA CCGAGAGCCA GTACGACCTG
CTTGAATTCC GTCATGCCAC CGAAGGCATG ATGGCGTACT TTGCCGCGCT GCGCGGTACA
GATGCCGACA TGAATAACAT CCAAAAAATG ATTTTGGAAG TGGAAGAGGC CCAAACTATC
GAAAGTAAGG CCGATGCCAT CGTGCGTTTT TATCGCGCCG TGGCCGAAGC CTCCCACAAT
GTGGCCATGT TACATCTGGT TTTAAGTTTA ACTCCGGTGC TGCACAAGAA TGTGGCACAA
AACCTGGAGC TTCTGAGCCG CCGCGAAGAT GCCTCCAGAA TGGCGAACGA ACACCGCCGG
GCACTGCTCG CCGCTATAGT TCGCCGCGAT CCCGAAGCGG CCCGCGAAGC CTCGAATGAG
CACTTGAGCT ACATCGAAGA GGTGATGTTG GCGGTCAGGG AAGAAGATAG CCGGTTGCAG
CGCAGCCTGC GCCGATTAAA GAGTGGCGCC TGA
 
Protein sequence
MAYSKINQPK ISDVIMQQLE RMILEGSLKP GQKLPPEREL AIQFEVSRPS LREAIQKLEA 
KGLLMRRQGG GTYVKEQLWQ SMADPIVELM QSDTESQYDL LEFRHATEGM MAYFAALRGT
DADMNNIQKM ILEVEEAQTI ESKADAIVRF YRAVAEASHN VAMLHLVLSL TPVLHKNVAQ
NLELLSRRED ASRMANEHRR ALLAAIVRRD PEAAREASNE HLSYIEEVML AVREEDSRLQ
RSLRRLKSGA