| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0369 |
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| Symbol | |
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| ID | 4602625 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 446213 |
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| End bp | 447919 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639779706 |
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| Product | type IV pilus biogenesis protein PilB |
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| Protein accession | YP_926250 |
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| Protein GI | 119773510 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0217494 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000124471 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGCCAACAA CCGGCTTGCA CTTAGGATTG TCGACGCTGT TTTTACGTAA AGGACTGCTC
ACAGAAGAGC AGCTCTCCGA AGCAGTATCC CAATCACGCA AAAATCGGCA TTCATTGGTC
ACTACTCTTG TGATCAGTAA GCTAATATCT GCAAGAGAAA TTGCAGAGCT TTGTTATGAA
GAATACGGCA CGCCGCTTCT GGATTTAGCC GAGTTTGATG TTTCCAGCAT TCCCGAAGAT
TTTCTCAATA AAAAGCTCAT CGAGAAGCAC CGCTGCCTGC CACTGTTTAA GCGTGGCAAC
CGGCTGTATA TAGGTACATC TGACCCCACC AACATTCCCG CACTGGAAGA TTTTCAGTTT
TCAGCAGGTT TGCACGCCGA AGCTATTTTG GTGGAAGACG ATAAGCTTGC CAAAGCGCTG
GAGAAAATCC TTGAAGAAGA CATCAGCGCT CTGGATTTGG GGGGCTTGGA CGAAGAAGCT
CTTGCTGGCA TTGAAGTTAC TGATACCGAC AAGCGCCCGG AAAATGATAA TGAAGGCGCC
GACGATGCCC CAATAGTTAT CTATATCAAC AAGATTTTGA CAGATGCTAT TCGCCGCGGC
GCATCAGATT TGCACTTTGA ACCTTATGAG AAGCGCTACC GCATCCGTTT TCGTATCGAT
GGCATTTTGC ATGAAGTGTC TGAGCCGCCG ATTAACCTCT CAGGGCGCAT TTCTGCACGC
TTAAAGGTGA TGTCAAAACT CGACATTGCC GAGCGCCGCC TGCCCCAAGA TGGCCGCATA
AAGATGAAAC TCAGCCGCAC CAAGAGCATC GATTTTCGGG TAAGTACCCT GCCGACGCTC
TGGGGCGAAA AAATTGTAAT GCGTATTCTG GACTCCTCTT CTGCCCAGCT TGGTATCGAG
AAGCTCGGTT ACGAGCCAGA CCAAAAGCAG CTGTACCTCG ATAACCTCGC TAAACCCCAG
GGCATGATTC TGGTGACCGG CCCCACAGGC TCGGGTAAAA CCGTATCCCT GTACACCGGC
CTTAATATCC TCAATACCGA AGAGCGCAAC ATTTCCACCG CCGAAGACCC GGTAGAAATA
AACCTTGAAG GCGTGAATCA GGTTCACATT AATAACAAGG CAGGACTTAC ATTTGCGTCT
GCTTTGCGAT CGTTTTTGCG TCAGGACCCT GACGTGGTGA TGGTGGGGGA AATCAGGGAT
TTGGAAACCG CCGAGATTGC CATTAAGGCA GCTCAAACCG GCCACTTGGT GTTATCCACC
CTGCACACCA ACTCTGCCGC CGAAACCCTT ACCCGTCTTT TAAATATGGG GGTGCCGGGC
TATAACATCG CGAGCTCGGT GAATTTGATT ATTGCCCAGC GCCTCGCTAG GCGCCTGTGC
CCAGAGTGTA AACAACCGGA AGAGATCCCC AATCACGAAC TGGAGCGCCT GGGTTTTAAT
CAGGCGCAGA TTGCCGAAGG CTTCACCGCT TTTAAGCCCT GCGGCTGCGA TTTATGTTCC
GGTGGTTATA AAGGTCGCGT GGGTATTTAT GAAGTCATGC CCATGAGTGA TGAAATTGCA
AGGGTCATTA TGGAAGGCGG TAATTCGCTT GAAATTGCTC GCATGGCCAA GTCTCAGGGC
GTAAGGGACC TGCGCTTATC AGGGCTCCTT AAGGTGATAC AAGGCGTAAC CAGTATTGCA
GAGGTTAACC GCGTGACCAG TTTTTAA
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| Protein sequence | MPTTGLHLGL STLFLRKGLL TEEQLSEAVS QSRKNRHSLV TTLVISKLIS AREIAELCYE
EYGTPLLDLA EFDVSSIPED FLNKKLIEKH RCLPLFKRGN RLYIGTSDPT NIPALEDFQF
SAGLHAEAIL VEDDKLAKAL EKILEEDISA LDLGGLDEEA LAGIEVTDTD KRPENDNEGA
DDAPIVIYIN KILTDAIRRG ASDLHFEPYE KRYRIRFRID GILHEVSEPP INLSGRISAR
LKVMSKLDIA ERRLPQDGRI KMKLSRTKSI DFRVSTLPTL WGEKIVMRIL DSSSAQLGIE
KLGYEPDQKQ LYLDNLAKPQ GMILVTGPTG SGKTVSLYTG LNILNTEERN ISTAEDPVEI
NLEGVNQVHI NNKAGLTFAS ALRSFLRQDP DVVMVGEIRD LETAEIAIKA AQTGHLVLST
LHTNSAAETL TRLLNMGVPG YNIASSVNLI IAQRLARRLC PECKQPEEIP NHELERLGFN
QAQIAEGFTA FKPCGCDLCS GGYKGRVGIY EVMPMSDEIA RVIMEGGNSL EIARMAKSQG
VRDLRLSGLL KVIQGVTSIA EVNRVTSF
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