| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0350 |
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| Symbol | |
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| ID | 4602606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 419389 |
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| End bp | 420756 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639779679 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase |
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| Protein accession | YP_926231 |
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| Protein GI | 119773491 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.915441 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.12491 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCCCTC TGAGTCTGAC TCAATTGGCG GCAGCCACCC ATGGGCGTCT TTGTGGCGAG
GATGTTGTCG TGTCACATCT CGACAGCGAC AGCCGAAAAA TGACCGTGGG CAGCTTGTTT
GTGGCATTGA AGGGTGAGCG TTTTGACGGC CATGAGTTTG CCGAAGCCGC CGCAGCAGCA
GGGGCATCAG CGCTTTTGGT TGAACGTGAG CTGCCGCTCG CGCTGCCACA ACTGGTGGTT
GCCGATACAC AAAAGGCCAT GGGCCAAATT GGCGCCCTGG TGCGCGACAG CGTAAATCCT
GTTTGTGTGG CACTGACCGG CTCAAACGGC AAAACCAGTG TAAAAGAGAT GGTCGCCACC
GTGCTGTCGC AACATCATTC CGTGCTCTTT ACCGCAGGTA ACTTTAACAA TGAAATCGGT
GTGCCTCTAA CCCTGCTGCG TCTGGAGCAG GGGCACGAGT ATGGGGTATT TGAGCTGGGT
GCGAACCACA AGGGCGAGAT TGATTACACC TCATCACTGG TTCGTCCTTC GGTGTCACTG
GTCAACAATG TGGGCAGCGC TCACCTTGAA GGTTTTGGCT CAGAGGCCGG TGTTGCCGAG
GCCAAGTCCG AAATCTATCT GCATCTGGCG CAGGACGGTG TGGGGATTGT GAATCTCGAC
GACCGCTACG CAGAGACCAT GCTCAACAAG CTCAAGGGAA AGCGGGTACT GACCTTTGGG
CTGGGTGCCG GGGCCGAGAT TACCGCCCGG GAAGTGACTG CCGATGCCTT CGGCAGATAC
AGCTTTTACC TCTGCCATGG CGGAGACCAT GTGACTGTGA GTTTGCCGCT GGCAGGCAAG
CATCAGGTGT CCAATGCGCT GGCAACGGCC GCCATCTGCA TTGCCCTGGG CTTACCTTTG
CAAGAGATAG CAGCGGGTCT TGCCAAACTG GCTCCGGTCA AGGGACGTAT GATGCCACGC
CAGTTGGGAC GACTGCTGTT GGTGGACGAC AGCTACAATG CCAATCCCAA TTCAGTGGGG
GCTGCCATCG ACTGGCTGAA AGAAATTTCT ACAAACAGGA CCCTGGTACT GGGCGATTTG
GGTGAATTAG GCGACAATGC TGCCCTTTTG CACTTTGAGC TGGGGCAGAA GGCCAAAGAA
GCCGGGCTCG ACAGCCTGTT TTGTCTGGGC AGTTTGAGCC GCCATGCCAG CCAAGCCTTT
GGCAGTAAAC ATTTCGAAGA GCTGGATGCT CTCGTGAGTG AATTGATTAA CTATATCAAC
GGGGTAGAGG GAGATGTGAC CCTGTTGGTG AAAGGGTCTC GCAGCGCCGC CATGGAGCGG
GTTGTAGAGG CCTTAACAGC CGCCCATGGG CGCGGGGAGC TGAAATAA
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| Protein sequence | MIPLSLTQLA AATHGRLCGE DVVVSHLDSD SRKMTVGSLF VALKGERFDG HEFAEAAAAA
GASALLVERE LPLALPQLVV ADTQKAMGQI GALVRDSVNP VCVALTGSNG KTSVKEMVAT
VLSQHHSVLF TAGNFNNEIG VPLTLLRLEQ GHEYGVFELG ANHKGEIDYT SSLVRPSVSL
VNNVGSAHLE GFGSEAGVAE AKSEIYLHLA QDGVGIVNLD DRYAETMLNK LKGKRVLTFG
LGAGAEITAR EVTADAFGRY SFYLCHGGDH VTVSLPLAGK HQVSNALATA AICIALGLPL
QEIAAGLAKL APVKGRMMPR QLGRLLLVDD SYNANPNSVG AAIDWLKEIS TNRTLVLGDL
GELGDNAALL HFELGQKAKE AGLDSLFCLG SLSRHASQAF GSKHFEELDA LVSELINYIN
GVEGDVTLLV KGSRSAAMER VVEALTAAHG RGELK
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