| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0333 |
|---|
| Symbol | |
|---|
| ID | 4602589 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 399235 |
|---|
| End bp | 401058 |
|---|
| Gene Length | 1824 bp |
|---|
| Protein Length | 607 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639779662 |
|---|
| Product | ATP-dependent DNA helicase RecQ |
|---|
| Protein accession | YP_926214 |
|---|
| Protein GI | 119773474 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0514] Superfamily II DNA helicase |
|---|
| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.510755 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAAC CAGCATCAGA ACACACCCAG GATCCTCTGA GCCATTGCCT GCAACAGGTA
TTTGGTTATC GGGATTTCAG GCCCGGCCAG CGGGAGGTGA TGACGCGGGT GTGTCAGGGT
GAAGATTGCC TGGTGATCAT GCCCACCGGC GGCGGCAAGA GCCTTTGTTA TCAGGTGCCC
GCATTGGTGT TACCCGGTGT AACACTGGTG GTATCGCCGC TGATTTCCCT GATGAAAGAT
CAGGTCGATA GCCTCATTCA GTCCGGTGTT GCTGCTGCGT ATCTCAATTC CTCCCAGCCC
CGCGAGCAGG CTATAGAGGT GCTGCGCCAG CTCAGGTTCG GTGAACTTAA GCTGCTGTAT
GTGTCGCCAG AACGTTTATT GCAGGGGGAT TTTTTAAGCC GGCTTGATGA ACTGCATATC
AGCCTGTTTG CAGTGGATGA AGCCCACTGT ATCAGTGAGT GGGGGCACGA TTTCAGGCCC
GAATATGCTG CGCTGGGCCA GCTTAAGCAG CGCTTCCCCC ATGTGCCTGT GATGGCACTT
ACTGCCACTG CAGATGAAGC AACCCGCAGC AGTATCTGCG AACGTCTTGG CATACAGCCA
TTTCAGCATC TTGCCAGTTT CGACAGACCC AATATTCGCT ACACAGTGGC CGAAAAGCTT
AATGCAGCCA ACCAATTGCG ACAATTTATC CAGTCGCAAA AGGGCGCCAA CGGCATTGTG
TACTGCAGCA GCCGTCGCCG GGTGGATGAG GTTGCCGAGC GGCTCAGACA GCAGGGATTC
TATGCTGAGG GTTATCATGC GGGCATGACT CAGGATGAAC GGGCGAGCGT ACAGGACAGG
TTTCTGAAAG ATCAAATCGA TGTGGTGGTG GCCACAGTCG CCTTTGGTAT GGGGATTAAC
AAGTCCAACG TGCGCTTTGT GGTGCATTAC GATATTCCCA AGAGCATTGA GTCCTATTAC
CAGGAAACCG GCAGAGCCGG TCGGGATGGT CTGGATGCCG AGGCTTTGCT GCTATTTGAC
CCCGCCGATA TAGGCCGGGT GCGGCATCTG ATTGAACAGC AGGAGCCCGG GCCTCAGCAG
CAGGTGGAGT TTCATAAGCT GTATTCCATG GCGGCCTTTG CCGAGGCGCA AACCTGCCGC
CGTCAGGTAT TGCTGCACTA CTTTGGTGAA GCGGCAAACG AACCCTGCGG CAACTGTGAC
ATCTGCATCG ACCCACCCAA ACGTTACAAC GGTACCGAAG ATGCACAAAA GGTGCTTTCG
TGTATTTACA GGCTAAATCA ACGTTTTGGG GTCAATCATC TCATTGAAGT CTTGCGGGGT
TCCAAAGCCG CTTCCGTGGT AGACCGGGGG CACGACAAGC TGTCAACATG GGGCATTGGC
AAAGAGAAGA GCACAGAGTA TTGGCTGAGT GTCACCCGTC AGCTTATTCA CCTGGGACTC
GCCAGCCAGG ATATTACCCG TGGCTCGTCG GTACGCCTGA ACAGCGCAGC CAGACCCGTT
TTGAAAGGGG AGGTGGCGCT GATGCTTGCC GAGCCTCGCC TTAGCCTCAG TGATGTGCCG
CGTAAGCGCA CATCGAGTCG AACGCCGCAA AATTACGATC GTAAGTTGTT TGCCAGGCTC
AAAAATTTGA GGCGCACTAT AGCCGAAGAG CAGGATGTGC CGCCCTATCT GGTGTTCAAT
GATGCCACAC TCGCTGAAAT GGCATGGATG CTGCCCAAAT CAGAGGCTGA GCTGTTAGCC
GTTAACGGTG TGGGTGAACG TAAGCTGGCT CGGTTTGGTG GTGAGTTTCT CGACGAGATA
GCCGCTTACA TCAGTGGGGA TTAG
|
|---|
| Protein sequence | MEQPASEHTQ DPLSHCLQQV FGYRDFRPGQ REVMTRVCQG EDCLVIMPTG GGKSLCYQVP
ALVLPGVTLV VSPLISLMKD QVDSLIQSGV AAAYLNSSQP REQAIEVLRQ LRFGELKLLY
VSPERLLQGD FLSRLDELHI SLFAVDEAHC ISEWGHDFRP EYAALGQLKQ RFPHVPVMAL
TATADEATRS SICERLGIQP FQHLASFDRP NIRYTVAEKL NAANQLRQFI QSQKGANGIV
YCSSRRRVDE VAERLRQQGF YAEGYHAGMT QDERASVQDR FLKDQIDVVV ATVAFGMGIN
KSNVRFVVHY DIPKSIESYY QETGRAGRDG LDAEALLLFD PADIGRVRHL IEQQEPGPQQ
QVEFHKLYSM AAFAEAQTCR RQVLLHYFGE AANEPCGNCD ICIDPPKRYN GTEDAQKVLS
CIYRLNQRFG VNHLIEVLRG SKAASVVDRG HDKLSTWGIG KEKSTEYWLS VTRQLIHLGL
ASQDITRGSS VRLNSAARPV LKGEVALMLA EPRLSLSDVP RKRTSSRTPQ NYDRKLFARL
KNLRRTIAEE QDVPPYLVFN DATLAEMAWM LPKSEAELLA VNGVGERKLA RFGGEFLDEI
AAYISGD
|
|---|
| |