| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0332 |
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| Symbol | |
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| ID | 4602588 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 398114 |
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| End bp | 398995 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639779661 |
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| Product | rarD protein |
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| Protein accession | YP_926213 |
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| Protein GI | 119773473 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2962] Predicted permeases |
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| TIGRFAM ID | [TIGR00688] rarD protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.100395 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACCG ACCACGAATA CCGCAAGGGC ATATTACTCG CCATTGGCGC GTACACCATG
TGGGGCTTCG CACCTTTATA TTTCAAACTA TTGGAGCAAA TTTCTGCCAC CGACATCCTG
CTCCACCGGG TTATCTGGTC GTTTGTGTTT ACCGCGTTGC TGATGGTGTT CATCGGCGGC
TTTGGCAAGC TGCGCCAACT GCTGAAGGCC CCCAAACAGC TATTGGTGTT GCTGGTTACA
TCGGTTTTGA TTGCCGGTAA TTGGCTGCTC TTCATCTGGG CGGTGAATAA CGACCATATG
TTGGATGCCA GCCTGGGTTA TTACATCAAT CCACTGCTCA ATGTACTGTT AGGGATGGTG
TTTCTGGGCG AACGACTCAG ACCCTTACAG TGGTTTGCGG TGTTCCTTGC CACCGTTGGC
GTGACGGTGC AGGTGATATC TTTCGGTTCC ATTCCCGTGG TATCGCTGGC GCTGGCAGGC
TCATTTGGCA TTTATGGCCT GCTGCGAAAA AAGGTCAAGG TGGATGCCAA AACCGGACTT
TTGGTAGAAA CCGCCATCTT GATGCCCGTT GCCCTGGGTT ATTTGGTGCT GACGCTTGGC
AGTGCAGAGC ACAGCATGCT GAGCAATGAC TGGCAGCTCA ATCTGCTACT GGTCGCTGCC
GGGATTGTGA CCACAGCACC GCTGCTGTGC TTTGCGGGGG CGGCGGTGCG TATTCCTTTA
TCCATGCTGG GCTTTTTCCA ATATATAGGC CCCAGCATTA TGTTTATCCT GGCGGTCAGC
CTCTATGGCG AGCCTTTTGG CGTGGAAAAG AGCATCACCT TCGGTTTTAT CTGGACGGCA
CTGGCGGTGT TCACACTGGA CATGCTCAGG CGTCGGGGTT GA
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| Protein sequence | MNTDHEYRKG ILLAIGAYTM WGFAPLYFKL LEQISATDIL LHRVIWSFVF TALLMVFIGG
FGKLRQLLKA PKQLLVLLVT SVLIAGNWLL FIWAVNNDHM LDASLGYYIN PLLNVLLGMV
FLGERLRPLQ WFAVFLATVG VTVQVISFGS IPVVSLALAG SFGIYGLLRK KVKVDAKTGL
LVETAILMPV ALGYLVLTLG SAEHSMLSND WQLNLLLVAA GIVTTAPLLC FAGAAVRIPL
SMLGFFQYIG PSIMFILAVS LYGEPFGVEK SITFGFIWTA LAVFTLDMLR RRG
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