Gene Sama_0304 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0304 
Symbol 
ID4602560 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp369739 
End bp372060 
Gene Length2322 bp 
Protein Length773 aa 
Translation table11 
GC content55% 
IMG OID639779633 
Productputative alpha-1,2-mannosidase 
Protein accessionYP_926185 
Protein GI119773445 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3537] Putative alpha-1,2-mannosidase 
TIGRFAM ID[TIGR01180] alpha-1,2-mannosidase, putative 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACAA TAACTCTGAA AGAGGGCGCC CTGTCCTTAC CACGTCTGAC ACCCTTGTTG 
TTAACCCCAA CGCTGTTGAC CTTCTCCTTA CTCACGGCAG TGGGCTGTAC GACTACCCAC
GGCACCTCAA ATGCTCAGCA GGTGCACGCC GAGTCCCCGG CGCAAAGCGA AGCCCTCAAC
CATGTGGATC CTTTTATCGG CACAGGTGGC CATGGTCACA CCTTTCCCGG TGCTTTGGTC
CCCTTTGGCA TGGTGCAGTT GAGCCCGGAT AACCCATCCA AGGGCTGGGA TTGGACCTCG
GGTTATCACT ATTCTGACGA TACCTTGCTG GGCTTCAGCC ACACCCACTT ATCAGGCACT
GGCGTGGGCG ACATGCTGGA TGTGCTGGTG ATGCCCTTTC GCGGCGACTT TCTGAGCCGC
CCAAGAGACG ACAAAGACCG TATCTTCACC CACTATGGCC ATGACAAAGA GAGTGCGACG
CCGGGCTATT ACAGCCTGTA TTTGCCGGAA GAACAGGTGC AGGTGGAGCT GACCGCCTCC
ACCCGCGCCG GGGTTCACCG CTACCGCTTT GATGGTGACA CAGATGCAAA GCTATTGATT
GATTTGGGTT ATGCCCAAAA CTACGACAAA CCCGTGGTGA CCTTCCTGCG GGTCGAAGAT
GAGCACACCT TAAGTGGTTA TCGGTTATCT ACCGGTTGGG CCAAAAATCA GCCGCTGTAT
TTTGTGGCGA AATTTGATCA GCCCTTCAGT CATCAACTCT ACAGCGAAAA CCAGCCCATC
AAGGGTGAGC AGCTACAGGC CGAAAAAGGC CGCATAGTGC TGAACTTTGG TTTTTCGTCG
ACCGGTTCTT TGTCGACCGG TTCTTCGTCG GCTGCTTCTT CTGCCGAGAA AACTGCAAAA
GTGGTGGAGG CCAGGGTCGC CCTGTCTTAC ACCAGCATTG CCGGTGCCAA GGCGAACCTG
AAGGCCGAAG TGGCCGACCT GAGCTTTGCC CAAATCAAAG CCAATGCCCG TCAGGCCTGG
GCGCAGCAGC TTGGAAAGTT CGAGGTTGAA GACGGCAACG AGGTCAACAA GACCAAGTTT
TACACCGCGC TCTACCATGC CTTTGTCGCG CCCCAGGTAT TCCATGATGT GGATGGCGCC
TTTTTCGGTG CCGATGGTGC CGCCCATGCC AACCCGGGCT ATGGCCGTTA TTCATTGTTC
TCACTCTGGG ACACCTTCAG GGCTCTGCAT CCGCTGCTGA CGGTCAGCAA CCCCGAGCGG
GTCGATGACA TGGTCAAGTC CATGCTGGGC TTTTATGACG AGACCGGGCT ACTGCCCACC
TGGGACCTGA TGTCCAACGA AACCGACGTG ATGATTGGAT ACCATGCGGT GCCCGTGATT
GTGGACGCCT ATCTAAAGGG TTTAACAACC GCGGACCCAG AACACATCTA CGCCGCCATC
AAGGCCTCGG CAATGCAGGA TAGATTTGGC ATCGACAAGT TCCGGGAATA CGGCTTCGTG
CCTTCGGATC TGGAAATTGA GGCCGTGTCC AAAACCCTGG AATATGCCTT CGATGACTGG
GCAATAGCAC AAATGGCCAA AGCGCTTGGC AAAACTGAAG ACTATCAGGT GTTCAATCAA
CGTGCTCAGA GCTACAAAAC CCTGTTTGAC GCTGAAACCG GCTTTATGCG CGGCAAGGAT
CATCAAGGTA ACTGGGTAAC GCCTTTCAAT CCCACCTATG TGGAGCACCG CAACACCGAC
TACACCGAGG CCAATGCCTG GCAGTACAGC TTCTTTGTGC CCCATGACGT ACCGGGCCTA
ATGGCCTTGT ACGGAAATGA GCAGCGCTTT GTGGCCAAAC TGGATGAGCT TTTCTCCACC
AGTTCTGAGA TGCAGGGGGA TGTATCCCCG GATATTTCAG GGCTTATTGG CCAATACGCC
CACGGCAATG AGCCTGTGCA TCATGTTGCC TACCTGTATG CCTTTACCGA TAAAAAGCAG
CAAGGTGAAG CGCGTATCAA AGAAATCCGT GACACCATGT ATCTGGCGCA GCCCGATGGT
CTGGCCGGAA ACGATGACCT GGGTCAGATG TCGGCCTGGT ATGTGTTCAG CGCTTTGGGC
TTCTATCCGC TGAATCCCGT TGGCGGCGAC TACGTACTCG GCACCCCTCA GTTCGCCAAA
GCGACCGTGA TGCTGCCCAA TGGCAAAGCG TTCAAGGTAA TCAAGAAAGG CGAGGGATGG
GTGAAGGCCC TGTGGCTTAA TGGCAAAAAG CACGATAGCG CCATCCTCAC CCATCAGCAG
CTATTGGACG GCGGAGAACT GGTTTTCGAA TTGGCTGAAT AA
 
Protein sequence
MKTITLKEGA LSLPRLTPLL LTPTLLTFSL LTAVGCTTTH GTSNAQQVHA ESPAQSEALN 
HVDPFIGTGG HGHTFPGALV PFGMVQLSPD NPSKGWDWTS GYHYSDDTLL GFSHTHLSGT
GVGDMLDVLV MPFRGDFLSR PRDDKDRIFT HYGHDKESAT PGYYSLYLPE EQVQVELTAS
TRAGVHRYRF DGDTDAKLLI DLGYAQNYDK PVVTFLRVED EHTLSGYRLS TGWAKNQPLY
FVAKFDQPFS HQLYSENQPI KGEQLQAEKG RIVLNFGFSS TGSLSTGSSS AASSAEKTAK
VVEARVALSY TSIAGAKANL KAEVADLSFA QIKANARQAW AQQLGKFEVE DGNEVNKTKF
YTALYHAFVA PQVFHDVDGA FFGADGAAHA NPGYGRYSLF SLWDTFRALH PLLTVSNPER
VDDMVKSMLG FYDETGLLPT WDLMSNETDV MIGYHAVPVI VDAYLKGLTT ADPEHIYAAI
KASAMQDRFG IDKFREYGFV PSDLEIEAVS KTLEYAFDDW AIAQMAKALG KTEDYQVFNQ
RAQSYKTLFD AETGFMRGKD HQGNWVTPFN PTYVEHRNTD YTEANAWQYS FFVPHDVPGL
MALYGNEQRF VAKLDELFST SSEMQGDVSP DISGLIGQYA HGNEPVHHVA YLYAFTDKKQ
QGEARIKEIR DTMYLAQPDG LAGNDDLGQM SAWYVFSALG FYPLNPVGGD YVLGTPQFAK
ATVMLPNGKA FKVIKKGEGW VKALWLNGKK HDSAILTHQQ LLDGGELVFE LAE