| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0295 |
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| Symbol | |
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| ID | 4602551 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 353746 |
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| End bp | 356640 |
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| Gene Length | 2895 bp |
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| Protein Length | 964 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639779624 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_926176 |
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| Protein GI | 119773436 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.050609 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACAA ATAATTACAG TAAAGTTATT CGTAATCAGC GAATATTTGC AAAGTCCCTG
CTGTGTCTCT CGGTACTGAG TGCCATGGGA TACGCGCAAA CGCCCGAAGC CGAAAAGGCC
GACGAAGAGA ATATCGAAGT CATTGAAATC CGTGGTATTC GTGCTTCATC TGCAGAAAAC
CTGTCGATAA AGCGCACCTC CGATGCCGTG GTTGATGCCA TTACCGCCGA AGACATAGGT
AAGTTTCCGG ATAAAAACGT TGCAGACTCG CTGCAACGGG TACCCGGGGT AGTGATTCAG
CGCAGCGGTG GTGAGGGTGC CACCGTCAGC ATCCGTGGTC TGTCATCGGA CCTGACTTTC
ACCCAGCTCA ATGGCAACTT CATCGCCTCC TCACCAGGCG AACCGTCCCG CTCCTTCTCC
TATGCCCTTA TGCCCTCGAC CATGATTGAA AGGGTTGAGG TGTTCAAATC GTCCGAGGCC
CGACTCGACG AGGGTGGCAT TGGTGGTACC GTGCTGATGT ACAGCCGTAA GCCACTGAAT
ATGGATAAAA ACTCAGGCAT AGTTAACCTT GAGTACAGCA ATTCGGATAT CACAGATAAG
TACGAGCCTC AGTTCAGTGG TATCTATTCC TGGAAAAACG ATGATGAAGA TCTGGGCTTT
CTGCTCGGCT ACACCCGTCA GGACAGAACC AACCGCTCTC AAAGCGCCCG GGTCAATATC
ATCAACAAAA ACTTCCTCTA TCAGGAGCGC AAGGATAACC AGTTGGTTGA AGGCGGCGCC
AAGGGCTATG CGCCCCAGAG TATGGTGCAG GAAGTGCTCG AAGAGCAGCG CGAACGTGAA
GGTTTTCAGG TAACCACTCA GTGGCGCCCA ACCGACTCTC TTGAGTTTGG TATGAACTAC
TTCCGCTTTA CCCTTGGCCA GGATTCCATT CTCAACCAGC TTGAATACCC CGAGTGGAAC
AACAACGACA ACTTTTGGAC CGACGTGCGG GTCGACGCCG AAGCCGAATA CGTGACCGGG
ATTGATTATT CCGCCGGTAC CTCGGGCTCC CAGCGCCTGT CGGCCATTCC CCGTATTAAC
GGTGAATACA AGCGTGAAGA GTCCACCTCG GATACGTTCG ACTTTTATGC CAAGTACGAA
GGCGATAATT TCAATGCCAA GCTGACCTTC GGTAAGACCA AAGCCGAGGG CGGACCATCT
GAAAAGTTCC GCGCCGCTTA CTATGCCAAC GAGTCATCTC TGTATTATGG CTATGATCTA
TCGGGCCATA AGATGACCAC CTACATGGAC CCCAAGATGA TTGAAAACCT GACCGCCGGT
ATCGGTGGCC AGGCCGACGT GGGCGCCACA GACTCCAGTT TTGTTACCGG CACCCAGGAA
GAAAAATACG CCTCGCTGGA TGTGGATTAC TTTGTCGATT GGGGGCTGGT GCACACCCTG
CATTTCGGTA TGAAGTATCG GGACGGCAAG ATACACCGCG ATACCCGCAA TACTTTCTAT
CTCTCACCGG ATTTTGATAT TGCCGCAGGT GAAGCCGCCG GCACCATCAA CCTTGACGAT
GACTACTCCC GCAACGATGG CATCCCTGAC ATCAGAGACG TGATAATGTC AGGCTCACTG
GGCAATCTGT CGGATGTGAT TAATACCAAC CTGTTCCCGG CGGTTGACTG GCAGCGTTAT
CAGCAGATTG TCAGCGAGAA CTTTGTTCAA TACACCCGTA TCGAACCCAA CTACGTCTAC
AACGTACAGG AAGAGATCAC CGCCGCTTAC CTGCAGGCCG ATTTCAGCTA CGAAGACTTC
CGCGGTAACC TGGGTTTGCG CTATGTGAGC ACCACCACCA CGTCCGGCTC GTCTGACAAA
ATCCTTTATC GTCTCGACTG GAAAGATGCT CAGGGCAACC TGCTGCCAGA AGACGAACAG
CGAGTAGAAG ACTTTGTTTA TCTGGAAAAA GAAAACACCT ACGACAGATG GCTGCCAAGC
CTGAACCTGG TGTGGGATCT GGCAGATAAC TGGGTTTGGC GTTTTGCCGC CGCCAAGGTA
ATGGCCCGTC CGGGGTATGA TGACCTGGGC CAGTTCCAGA CACTGGTGTA CACCTCCAAC
GAATACTCCG CCGACCGCAG CGCCGCCGAC GACTTCGACA GCATCCGCGA CAGCGAAGGC
TGGACCGGCT CAGGCGGTAA CTCGTCGCTG TTGCCCATGG AGTCCACTCA GTTTGATACC
TCGCTGGAAT ACTATTACGG CGAAGGCTCT GGTGTGGGTA TTGCCTTCTT CAAGAAGAAC
GTCGACAACT TCGTGGTGCC GCTCATCATA GATACCACCC GCAGTGTTCC TGAGCAGAGT
TTCACCCTGC CCAATGCCGG CGACAAGGTA GTCACCGCCG GTGGCGATGA CCTGCTGGTA
CGCGACTTCT ACACTGTCGC CAACGGCACC GATGCCAGCT CCAGCGGTAT GGAAGTGTTT
ATGCAGCACT TCTTTGATAA CGGATTTGGT ATTTATGCCA ACTACACCCG CAACAACACC
AATCAGGCCA ACGTCGAATT GGATGGGCAG AAGGTAGGTG AGTCGCCGCT GATTGGCAGC
TCCAAATACC AGTGGAACTT ATCTGCTTTC TACGAAAACG ACGACCTGAG TGTCAGGGCT
TCCTATAACA AGCGTGGTCC AAGTGTGGGC GGCTATGTCG CCTCCTGGGA GACCAACTAC
TACACCGAAG CCTATGACCA GATAGACGTC AATGCCAGTT ACAACCTCAC CGACAGCCTG
ATGTTGTCGG CCTCTGTGAT TAACCTGACC CAATCGGAAA CCTACGTGCA TCTGGGGAAT
GATACGGACA ACCGTTTCAT CCAGAACGCT TACGCCGGTC GTCGCTTCTA CTTGGGCGCT
ACCTACAGGT TTTAA
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| Protein sequence | MTTNNYSKVI RNQRIFAKSL LCLSVLSAMG YAQTPEAEKA DEENIEVIEI RGIRASSAEN
LSIKRTSDAV VDAITAEDIG KFPDKNVADS LQRVPGVVIQ RSGGEGATVS IRGLSSDLTF
TQLNGNFIAS SPGEPSRSFS YALMPSTMIE RVEVFKSSEA RLDEGGIGGT VLMYSRKPLN
MDKNSGIVNL EYSNSDITDK YEPQFSGIYS WKNDDEDLGF LLGYTRQDRT NRSQSARVNI
INKNFLYQER KDNQLVEGGA KGYAPQSMVQ EVLEEQRERE GFQVTTQWRP TDSLEFGMNY
FRFTLGQDSI LNQLEYPEWN NNDNFWTDVR VDAEAEYVTG IDYSAGTSGS QRLSAIPRIN
GEYKREESTS DTFDFYAKYE GDNFNAKLTF GKTKAEGGPS EKFRAAYYAN ESSLYYGYDL
SGHKMTTYMD PKMIENLTAG IGGQADVGAT DSSFVTGTQE EKYASLDVDY FVDWGLVHTL
HFGMKYRDGK IHRDTRNTFY LSPDFDIAAG EAAGTINLDD DYSRNDGIPD IRDVIMSGSL
GNLSDVINTN LFPAVDWQRY QQIVSENFVQ YTRIEPNYVY NVQEEITAAY LQADFSYEDF
RGNLGLRYVS TTTTSGSSDK ILYRLDWKDA QGNLLPEDEQ RVEDFVYLEK ENTYDRWLPS
LNLVWDLADN WVWRFAAAKV MARPGYDDLG QFQTLVYTSN EYSADRSAAD DFDSIRDSEG
WTGSGGNSSL LPMESTQFDT SLEYYYGEGS GVGIAFFKKN VDNFVVPLII DTTRSVPEQS
FTLPNAGDKV VTAGGDDLLV RDFYTVANGT DASSSGMEVF MQHFFDNGFG IYANYTRNNT
NQANVELDGQ KVGESPLIGS SKYQWNLSAF YENDDLSVRA SYNKRGPSVG GYVASWETNY
YTEAYDQIDV NASYNLTDSL MLSASVINLT QSETYVHLGN DTDNRFIQNA YAGRRFYLGA
TYRF
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