| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0287 |
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| Symbol | |
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| ID | 4602543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 337389 |
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| End bp | 341714 |
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| Gene Length | 4326 bp |
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| Protein Length | 1441 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639779616 |
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| Product | alpha-1,6-glucosidases, pullulanase-type |
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| Protein accession | YP_926168 |
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| Protein GI | 119773428 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02103] alpha-1,6-glucosidases, pullulanase-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAGTA TTTCTAAACT TGCCCAACTG TTTGCGCTGG CCCTTGCTGC CAGTGTGCTG
TGGGGCTGTG GCAGCGATTC ATCTGAGCCC GGCGAGGTGC TGCTGACCTG CAATGTGCCC
ATGGTGCCCG ATGCCACCGG CACCCAGTGT GTGGCGCCGC CACCCATTCA GTGCCCGCCA
CCCACAGTGC CCGACGCCAA AAACGAGCAG TGTGTTGTGG GTGCCGACCC CACCCTGCCT
GACCCTGTGT ATTTTCCCAA GGCCAACGAG GCGGTTATCT ATTACAACCG CCCCAAGGAT
GCCGACAACA GCCCGAACGA CCCTGTTTAC GACGGCTATA GGTTGCACAC CTGGAACAAC
GACACCTGTG ACGCCTATGC GCCGCCATTC GACAGCAGCG ACTGGGCCAA TGGCCATGAG
TTTGATGGCA TAGACCCCAA CTACGGCGCC TACTGGATCC TTAACCTCAA GGAAGGCTAC
GGTGAGTGCG GTAACTTCAT CATCCACGTG GGCACCGAGG GCAGCGGTAA GGCGCTGGGT
GACGGCGACT TCAAGATGCC CCTCAAGCAG GATGATGAAA AGTTCGTGCG GATGAACTTT
ACCCTCCATG GCACGCCGTC AGTATTTGAG TATCCCATCC TCAATCTGGG CCCTCAGCCT
GCGGTGTTCA GCAACATGAG TGCCCACTGG CTCGACCGTC AGACCCTGTT GTGGGATCAA
ACCGAGGAAG GCGTGGCCGA GGTTAGGCTG CACTATTCGG CCAATGCCGA CCTGACCATC
GACGACAGCG GCATCAGTGG CGGCAGCCAT GTACTGACTG CCACCGAACT GACCGAGGCC
CAGCAGACGA GGGCGCCTGA GCTGGCCTCC TGGCAGGCCT ATCATTTGGA TGTGAGCGCC
GAGGAAGCCA AATCTTTGGC CAAGGCGCAG CTGGCGATGG CCGCCTTCGA TGCCGACGGC
AAGCCACTTT ACGCCACCTT TGTACAACAG GCGCGGGCAC TGGATGACCT CTACACCTCC
GGCGATGCCG ATGCCAATGA GGCAAACCTT GGGATAAGCT ACGATGGCGA TGCCGTTACC
GCGAGGCTGT GGGCGCCCAC GGCTCAGCGC GTGACCCTCA AGGTGTATGA CGACAGCAAA
AACTTAACCC GTAGTGAGGC CATGACTGAA GATGCGGCCA CCGGCATCTG GTCGTTCACC
GGCACCGGGC TTGACCGCCG CTATTACCGC TTTGAACTCA CCCTGTACCA TCCGGTGAGC
AAAAAGCTGG AAACCGTAGA AACCACAGAT CCCTACTCGG TCAACGTGTC TGCCAACGGC
CGTTTCAGCC AGTTTGTTAA CTTAAGCGAC ACCGACACCA TGCCCGAAGG CTGGGATGGC
CATACTGTGC CCGAGGTGGC AGACCCGGAA GACATAGTGG TGTACGAGGG CCATGTCCGC
GACTTCAGTA TCCGTGACGA GAGCACCAGC GCCGCCAACC GCGGCAAGTA TCTGGCCTTT
ACCGAAGAAG GCTCGGCACC GGTGGAGCAT CTGCGTGCGC TGGCGCAAAA GGGCCTGACT
CACTTCCATG TGCTGCCAGT GACCGACATG GCCACGGTAA ACGAGCTGGA GGATGAGCGG
GTAGAGCTGA CCGATACCCT TGGCACCCTG TGCAGCAAGA TTAACGACAG CGCCGATGCC
TGTAAGACCA AGGACAAGGG CGCCACTATC CAGAGCCTGC TGGAAGACAG CCTGCCCGGC
TCTGCCGATG CCCAGGCACT GGTGAACGCC ATGCGCGGTC TGGATGGCTT CAACTGGGGC
TACGATCCAC AGCATTTCCT TGCGCCCGAG GGTAGCTATG CCTCCACTCC GGATGGTGTA
GCCAGGGTTA AAGAGCTCAG AGCCATGAAC ATGGCGCTGC ACGGCATAGG TCTTCGCACC
GTGCTCGACG TGGTGTACAA CCACACCAGC TCTTCGGGGC TGTATGACAA CTCAGTGCTC
GATAAGGTGG TGCCCGGCTA CTACCATCGC TACGACCCGG TTTCCGGTGC CATGCAGCGT
TCTACCTGCT GCGAAAACAC CGCCACCGAA AACGCCATGA TGGCCAAGCT GATGAACGAC
ACCCTGGTGT CGCTGGCGCT GGACTTCGGC TTTGACGGTT TCCGTTTCGA TATCATGGGC
CATATTCCCA AGGCGGCCAT GCTGGCAGCG CGTGATGCGG TGCGCGCCGT GGACCCTGAC
ACCTACTTCT ACGGTGAGGG CTGGAACTTC GGTGAGGTTG CCGACAACCG TCTGTTCGAG
CAGGCCACAC AGGCCAATCT GGCCGGCACC GAGGTGGGCA GCTTTAACGA CCGTATTCGT
GAGGCCATCC GTGGTGGCAG CCTGTTCCAG AGCGAGCTAA AGGATGAAGT GCTGCGGGAT
CAGGACACCC TGCGCCTGTC CATGGCAGGT AACCTCAAGG ACTATGTCCT CAAGGACTTT
AACGGCAATT CGGCCAAGGG CAGCAGCTTC AGCTGGAACT CCCAGCCCAC GGCCTATGCC
GCCGATCCGG CCGACAGCAT CAACTATGTG TCCAAGCACG ATAACGAGAC CCTGTGGGAC
AAGCTGCAAT ACAGCCTCCC CGTGGGCATG AGCCTCGAAG ACAGGGTTCG GACCCAAAAT
ATCGCTGCTA CTGTGCCGCT TCTGAGCCAG GGTATTCCCT TCCTGCAGCT GGGCGGCGAC
ATGCTGCGCT CCAAGTCCAT GGACCGCAAC AGCTATGACT CAGGTGACTG GTTCAACTAT
GTCGACTTTA CCCAGTCCGG CAACAACTGG AACGTGGGTC TGCCGTTGGC ACAGGATAAC
CAGGGCAACT GGAATACCAT CACCGGCATT TCGGCCAACC CCAATACCGC GGCTTCGGCC
AGCGAGATTG GCTTTGCCGC CGAGGTGTTT GGCGAGTTTC TGCAAATCCG CCATCAGAGC
AAGCTGTTCC GTCTGACCAC CGCCGAGGAC ATCATTGCCC GGGTGGGCTT CCACAACGTG
GGCAAGCGCC AGACTCAGGG TGTGATAGTC ATGAGCCTGG ACGACGGTAC AGGTCTTACG
GATCTTGACC CTGCGGTTGA CGCCATCGTA GTCATGGTCA ATGGCACGGC AAGCAGTCAG
TCCCATACCG TACCGACGGC TGCGGGCTTC AGCCTGCATC CACTCCTGGC ATCCTCCATT
GATGCCAGGG TGCGCGGCGC CAGTTTCAGC GCCGGCGATA ACGAGGGCAC CTTTACCGTG
CCAGCCTACA CCACGGCCGT GTTTGTTAAG GCTCAGGGTT CGGCCCAGGG CGAAGGTCTG
TCGGCCAATG CCACTGTGGG CGCCCCCGAT GTGGTGCCCT ATGGCAGCAC CACAGTGTAT
GTCCGTGGCA GCCTGAACGG CTGGGGCACA GGCAATCCAC TGCAATACGT GGGCAACGGC
GAATACCGGG TGGCAATCAC CCTGGCCCCC GGCGACTATG AGTTCAAGCT GGCGTCGGAA
GACTGGAGCA CGGTGGACTT TGGTGGAGTG TCGGCAGGCG ATGCCGATGT GGAAGAGGGC
GTGGTTGAGC AATTGGCGGC CAAGGGTGCC AACCTTAAGT TCAGCGCAGC TCTGGCGGCC
ACCTATGTGT TCTCCCTCGA TGCCAGTGAC AAGGATAATC CGCAGCTGAC CGTGTACAAC
GAGGAGCCGT TCCCCGGCAC CCAGGTGTAC CTGCGCGGTG ATATGAACGG CTGGGGCACC
GACAACGCCA TGACCTATCT GGGTGGCGGC GTTTATCGGG TTGATGTGCA GCTGACTGCG
GGCAGCAAGG GCTTTAAGCT CGCCTCCAGT GACTGGAGTA CGGTGGATTT CGGCAGCGGT
GAGGCCGATG GCACTGTGAC CCTGGGCGTG GAGAAATTCC TCGCCGTGAA GGGGGGTAAC
CTCAGCATGA ACTTTGATGA GGACACCAGC TACAGCTTCA TCTTTGACCT GTCGAACCGC
AGTGAGCCAC TGCTTACCGT GTACAAGACA GACATTTTTG CCGGCACTGA GGTGTACCTG
CGCGGCGGCA TGAATGGCTG GGGCACAGAC AACCCCCTGA TGCATCAGGG TGGGGGTGTC
TACAGCACAG AAGTGAGCCT TGGTGCCGGT ACGGTTGAGT TCAAGGTGGC AAGTTCAGAT
TGGAGCACCG TGGATTTCGG TGCCCTGTCC GGCGATGTTG CCGATGTGGC GCTGGATCTG
GCCGAGCCGC TGGCGGCCAA GGGCGCCAAC CTCAAGCTCA ATGTGCTTGA TGCCGGTACC
TACCGCTTCA CGGTGGAAGG TCCGGACCCC AAGGCACCCA GTCTGACAGT GACGAGAGTG
AATTAA
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| Protein sequence | MLSISKLAQL FALALAASVL WGCGSDSSEP GEVLLTCNVP MVPDATGTQC VAPPPIQCPP
PTVPDAKNEQ CVVGADPTLP DPVYFPKANE AVIYYNRPKD ADNSPNDPVY DGYRLHTWNN
DTCDAYAPPF DSSDWANGHE FDGIDPNYGA YWILNLKEGY GECGNFIIHV GTEGSGKALG
DGDFKMPLKQ DDEKFVRMNF TLHGTPSVFE YPILNLGPQP AVFSNMSAHW LDRQTLLWDQ
TEEGVAEVRL HYSANADLTI DDSGISGGSH VLTATELTEA QQTRAPELAS WQAYHLDVSA
EEAKSLAKAQ LAMAAFDADG KPLYATFVQQ ARALDDLYTS GDADANEANL GISYDGDAVT
ARLWAPTAQR VTLKVYDDSK NLTRSEAMTE DAATGIWSFT GTGLDRRYYR FELTLYHPVS
KKLETVETTD PYSVNVSANG RFSQFVNLSD TDTMPEGWDG HTVPEVADPE DIVVYEGHVR
DFSIRDESTS AANRGKYLAF TEEGSAPVEH LRALAQKGLT HFHVLPVTDM ATVNELEDER
VELTDTLGTL CSKINDSADA CKTKDKGATI QSLLEDSLPG SADAQALVNA MRGLDGFNWG
YDPQHFLAPE GSYASTPDGV ARVKELRAMN MALHGIGLRT VLDVVYNHTS SSGLYDNSVL
DKVVPGYYHR YDPVSGAMQR STCCENTATE NAMMAKLMND TLVSLALDFG FDGFRFDIMG
HIPKAAMLAA RDAVRAVDPD TYFYGEGWNF GEVADNRLFE QATQANLAGT EVGSFNDRIR
EAIRGGSLFQ SELKDEVLRD QDTLRLSMAG NLKDYVLKDF NGNSAKGSSF SWNSQPTAYA
ADPADSINYV SKHDNETLWD KLQYSLPVGM SLEDRVRTQN IAATVPLLSQ GIPFLQLGGD
MLRSKSMDRN SYDSGDWFNY VDFTQSGNNW NVGLPLAQDN QGNWNTITGI SANPNTAASA
SEIGFAAEVF GEFLQIRHQS KLFRLTTAED IIARVGFHNV GKRQTQGVIV MSLDDGTGLT
DLDPAVDAIV VMVNGTASSQ SHTVPTAAGF SLHPLLASSI DARVRGASFS AGDNEGTFTV
PAYTTAVFVK AQGSAQGEGL SANATVGAPD VVPYGSTTVY VRGSLNGWGT GNPLQYVGNG
EYRVAITLAP GDYEFKLASE DWSTVDFGGV SAGDADVEEG VVEQLAAKGA NLKFSAALAA
TYVFSLDASD KDNPQLTVYN EEPFPGTQVY LRGDMNGWGT DNAMTYLGGG VYRVDVQLTA
GSKGFKLASS DWSTVDFGSG EADGTVTLGV EKFLAVKGGN LSMNFDEDTS YSFIFDLSNR
SEPLLTVYKT DIFAGTEVYL RGGMNGWGTD NPLMHQGGGV YSTEVSLGAG TVEFKVASSD
WSTVDFGALS GDVADVALDL AEPLAAKGAN LKLNVLDAGT YRFTVEGPDP KAPSLTVTRV
N
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