| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0286 |
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| Symbol | |
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| ID | 4602542 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 334406 |
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| End bp | 337336 |
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| Gene Length | 2931 bp |
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| Protein Length | 976 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639779615 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_926167 |
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| Protein GI | 119773427 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAAGC TCAAACCCAG TGTCCTGACT CTGGCGTTGG CGGCTGCCGG ATTGCCGCTG
GCAATGGTGC ATTCGGCGGC CTTTGCCGCC GAGCCGCAGC AAAGCGAGCC TCAGCAGACC
TCAGACCCAA CCGAGAAAGA GACCGACAAT CAAGGCAAGC TTAATCCGGA AGATGTGGAA
CGCATCGAAG TCACGGGTTA TCGCCGCAGT CTTATCGACT CACTCAATGC CAAGCGCTTT
GGCGATACCG TTTCCGAGCA ACTGTCTGCC GACGATTTGG GCGCCTTGCC CGATGTGTCC
ATGGCCGATG CGCTCACGCG CCTGCCGGGT ATCTCGGCGG TGCGTACCGG CGGCCAGGCA
GCAGAAATCA ATATCCGCGG TATGTCCGGC GGTTTTGTGT TTTCTACCCT CAATGGCCGG
GAGCAGGTGT CCACCAGTGG TTCCCGCAGT ATCGAATTCG ACCAGTACCC CTCAGAGCTC
ATCAACTCGG CAGCCGTGTA CAAGTCGCCC AAGGCATCCC TGATTGAAGG CGGTCTGGCG
GGCACGGTGG AGCTGGCCAC GGCAAGTCCC CTGGCGGCGG ATAAGGAACA TAATGTCACC
CTCAATGCCC GTGGCATGTA CAACGACAGA GCCAGCGAAG TGTATGGCGC CGAGGAGTTT
GGCCACAGGC TGAGTTTTTC CTATCAGGGC AAGTTCCTCG ATGAAACCCT GGGCGTGGCG
CTGGGTTATG CCCGGCTCGA GCAGCCCAGT GTAGCCACCC AGTTTATTGG TCTGGCCTAC
AGCGACAACA AGGATGTAGA CGGCCTCGCC GACGACACCA ATGGCCCTGA GGCCAATCCC
GCCAACGAAT ACATCAGCGA AGGTTTTGAG ATGCAGCACC TTGGCGGCGT TGAGGTGCGT
AACGGCTATA TGGGCGCCAT CGAGTGGGCG CCGGTGAGCA ACTTTAAGCT CAAGGCCGAT
GCCTTCCTGT CGCGCTTCGA CAGCGAAGCC TTTGCCCGTG GCTTCCGGGT TAAACTCGGC
GGTCCCACCA CGGCCGTCGC CAATCCGGTG CTGGATGGTA ACTCAGTGAT AGGCGGCACC
TTTAACCGCA CGACCCAAAG TTACACCCGG GTGGAGCTGG TCAACGATGA CAACCAGGAT
TTCGACCAGG TAAACAGCTT TGGGGTGAAT GCCGACTGGC AGATAACCGA CCGCCTGAAT
GTGGCGGCCG ACGTGTCTTA TTCCTCCGCC AAGAGCGATT TCCGTAACGG GCTTTTGTGG
TCAAACGTGG CTGTGGATGC CAATGCCGAT AAGCCTATTT TCGATGAAAA CGTGTCCATC
AGCTATTTGC TGAACGGGCT GGATCTGCCG GATCTGGGCT TCAATCAGGC CGACGCCTTC
TCGGATATCA ACCGGGTGAT GGTCAGTAAA TACGGCATCT ATCCCTATGA AAACGAAGAT
GAAGTAACAG CCTATCGCCT GGACTTCAAA TACGATCTCG ACAGTGATTG GCTGTCTTCG
GTGGAGTTTG GCGTGCGTTG GTCCGACAGG ACCTACAGCA ACGACCGCTC GGTGTTTGAG
TATGGCAACG ACGGCGGCTT CTCCAGCACC CAGCCGCCAC TGCGACTGAC CCAGGATATG
GTGACAGTGG TGGATTGGAG CGGCGACTTC AGCTACTTCC CCTCCTATCT GGCTATCGAT
CTCGACAAGG CGCTCAATGC CTGGTTCCCC GAGGGTATCC CCCAGCCGGT GCAAACCTGG
GGTAATGCCG ATGGGGTGCT TGACCCCATG GGTTACACCA CCAACTATTC CTGGTCTGTG
CTGCAAAGCG GCGAAGTGTA TGAGAAGGTG CTGGCCAGCT ACCTGATGTT TAACATCGAC
ACCGAAATCG GTGGCTTGCC GCTGACCGGT AACATAGGCC TGCGCGTGGT GGATACGGAT
CAGTCGGCCA CTATGCTGCA AAACGTGGGC GGCGATCCGG CTCAGGGTGC CCAGTATATT
GTGGATGAGA ATGGCATAGT CAATGACCTC TATGCCCCGA CAGTCGTGGG CACGACCTAC
ACCGACTATC TGCCATCCAT GAACCTGAGC CTCAAGCTCA CCGACGACAG CCAGCTGCGT
TTTGCTGCGG CCAAGGTGAT GGCGCGGCCA CCCATCAACC GTCTGGCGGG GGATGTCAGT
GCCTCGGTTA ACGATGACGG CGAGATTAAC GGCTCCAGTA CCAATAACCC CTTCCTGATG
CCCTTCTACG CCACCCAGTA TGACCTGTCT TACGAGTACT ACTTCGAAGA GGGCGCGCTG
GTGGCGGCGC TGTTCTACAA GGACATCGAC TCCTTTATCG ACACAGTCGC CATCGACGAC
TTTGACTTCC GCGGCCACGG CTTCAACGTG CCCGATTACA TAGTAGATCC CGTCAGCGGT
GAGCAGATAG AAACCACCAA CGGCACCTAC ACCACGGCGG TCAACAATAC CGAAGGCGGC
TATATCCGCG GTCTGGAACT GGCCTACACC CAGGTGTTTG CGTCACTGCC CAGCCCCTTC
GATGGTTTGG GGGTAAACAC CAGCTACTCC TACACCGACA GTGAGGTGCA GAAGCTCACC
AGTCTGGGGG GCGACAGTGT GCCGCAAACC CTGGAAGGTC TGTCGAAGCA TGTTGCCAAC
CTGACCCTGT TCTATGGCTA CGAGGGTTTC GAAACCCGTA TCAGCGCCCG CTACCGTTCG
TCCTTCGTGT CTGAGCAGGT GGCCATCAAC AGTCAGGTGG TGAATTACGA TGCCGAAACC
GTGATTGACT ATCAGGCGTC CTATCAGATT AACGACAATC TCGGGGTGCT GTTCCAGGTC
AACAACCTCA CCGACGAGCC CACCAAGAGC TACTTCGGCA CCGAGGCCAA GACAGGCACC
CTGCAGTATT TCGGTCGCCA ATTCTTCCTG GGGGTGACCT ATGCCATGTA A
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| Protein sequence | MFKLKPSVLT LALAAAGLPL AMVHSAAFAA EPQQSEPQQT SDPTEKETDN QGKLNPEDVE
RIEVTGYRRS LIDSLNAKRF GDTVSEQLSA DDLGALPDVS MADALTRLPG ISAVRTGGQA
AEINIRGMSG GFVFSTLNGR EQVSTSGSRS IEFDQYPSEL INSAAVYKSP KASLIEGGLA
GTVELATASP LAADKEHNVT LNARGMYNDR ASEVYGAEEF GHRLSFSYQG KFLDETLGVA
LGYARLEQPS VATQFIGLAY SDNKDVDGLA DDTNGPEANP ANEYISEGFE MQHLGGVEVR
NGYMGAIEWA PVSNFKLKAD AFLSRFDSEA FARGFRVKLG GPTTAVANPV LDGNSVIGGT
FNRTTQSYTR VELVNDDNQD FDQVNSFGVN ADWQITDRLN VAADVSYSSA KSDFRNGLLW
SNVAVDANAD KPIFDENVSI SYLLNGLDLP DLGFNQADAF SDINRVMVSK YGIYPYENED
EVTAYRLDFK YDLDSDWLSS VEFGVRWSDR TYSNDRSVFE YGNDGGFSST QPPLRLTQDM
VTVVDWSGDF SYFPSYLAID LDKALNAWFP EGIPQPVQTW GNADGVLDPM GYTTNYSWSV
LQSGEVYEKV LASYLMFNID TEIGGLPLTG NIGLRVVDTD QSATMLQNVG GDPAQGAQYI
VDENGIVNDL YAPTVVGTTY TDYLPSMNLS LKLTDDSQLR FAAAKVMARP PINRLAGDVS
ASVNDDGEIN GSSTNNPFLM PFYATQYDLS YEYYFEEGAL VAALFYKDID SFIDTVAIDD
FDFRGHGFNV PDYIVDPVSG EQIETTNGTY TTAVNNTEGG YIRGLELAYT QVFASLPSPF
DGLGVNTSYS YTDSEVQKLT SLGGDSVPQT LEGLSKHVAN LTLFYGYEGF ETRISARYRS
SFVSEQVAIN SQVVNYDAET VIDYQASYQI NDNLGVLFQV NNLTDEPTKS YFGTEAKTGT
LQYFGRQFFL GVTYAM
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