| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0285 |
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| Symbol | |
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| ID | 4602541 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 333460 |
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| End bp | 334149 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639779614 |
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| Product | nucleotidase |
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| Protein accession | YP_926166 |
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| Protein GI | 119773426 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02254] HAD superfamily (subfamily IA) hydrolase, TIGR02254 |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAACT GCTCGCCGCT CAGCTTTGAC TGGGTGTTAT TTGATGCCGA TGAAACCCTG
TTTCATTTCG ATGCCTTTGC CGGACTCAAG CGCTTGTTCG CGCGCTTTGA GGTGGACTTC
GGTGAGGCGC AATTCCACGA ATACCAGCAG GTGAACAAGC CCTTGTGGCT TGAGTATCAG
GATGGTCGCA TCAGTGCCAA AACCCTTCAG GAACAGCGGT TTGCCCTTTG GGGTGAGCGT
CTTGGGGTTG CTCCCGGTGA ACTGAACTCC GGCTTTTTGC AGGCCATGGC CGACATCTGT
GCGCCGCTGC CCCAGGTGCC CGAACTGCTT GAGAGCCTTA AAGGCCGCTA CCGCCTCGGC
ATCATCACCA ACGGCTTTAC CGAGCTGCAG CGCATTCGCC TCGAACGCAC CGGCTTTGCC
GATCACTTTG AACTCTTGGT GATTTCTGAA GAAGTGGGCC TGGCCAAGCC CGATAAGGCC
ATTTTTGACC ATGCCCTGGA TGCCATGGGC AACCCGGCCC GTGAGCGGGT GCTGATGGTG
GGCGATACCC TGTCCAGTGA CATTCAGGGC GGCCTCAATG CCGGGCTGCA CACCTGCTGG
TATAACCCCA ACGCCAAGGT TAACGAAGCG GGCATTTTGC CGCATCTGGA GATTAGCTGT
CACAGTGAGC TGGCTCGCTT ATTGGCCTGA
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| Protein sequence | MSNCSPLSFD WVLFDADETL FHFDAFAGLK RLFARFEVDF GEAQFHEYQQ VNKPLWLEYQ
DGRISAKTLQ EQRFALWGER LGVAPGELNS GFLQAMADIC APLPQVPELL ESLKGRYRLG
IITNGFTELQ RIRLERTGFA DHFELLVISE EVGLAKPDKA IFDHALDAMG NPARERVLMV
GDTLSSDIQG GLNAGLHTCW YNPNAKVNEA GILPHLEISC HSELARLLA
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