| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0258 |
|---|
| Symbol | |
|---|
| ID | 4602514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 295867 |
|---|
| End bp | 296772 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639779587 |
|---|
| Product | ornithine carbamoyltransferase |
|---|
| Protein accession | YP_926139 |
|---|
| Protein GI | 119773399 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0078] Ornithine carbamoyltransferase |
|---|
| TIGRFAM ID | [TIGR00658] ornithine carbamoyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCATT TGATATCGAT AAAAGAACTG ACGCAAAAGC AGATGTTGGA TCTGCTGACT
CTGGCAAAGG AGATCAAGGC CGACCCGGCC AAATACTCCC GCGCACTGGC GGGCAAGAGT
GTGGTAATGC TGTTTGAAAA GCCTTCTCTG CGTACCCGCG TCAGCTTCGA TATCGGTATC
AACAAGCTCG GTGGTCACTG CCTGTATCTG GACCAGCAAA ACGGGGCATT GGGCAAGCGC
GAGTCGGTAA AAGACTTTGC CTCTAACCTG TCTTGCTGGG CCGATGCCAT TGTGGCCCGT
ACCTTCGCCC ACGAAACTGT GGAAGGTCTT GCCAAGTATG GCCGGGTGCC GGTGATCAAT
GCGCTGTCGG ACCTTTACCA TCCCTGTCAG GGATTGGCTG ATTTTCTGAG TCTGGCCGAA
AAGTTCGACG ACCTGTCGAA AGTGCGTTTG GCCTATGTGG GTGATGGCAA CAACGTCAGC
CATTCGCTGA TGTACGGCGC CGCCTTGCTC GGGGCCACCA TGACGGTGAT CTGTCCTCCA
GGACACTTCC CTGATGGCTT TGAGGTGCAG CAGGCGCAGC AAATTGCTGC GGCCCACGGT
GGAAAACTGG TGTTAACCTC TGATATCAAT GCCATAGAAG GCCACGATGC CGTCTACACT
GATACCTGGA TCTCCATGGG CGACAACACG GCGCTGACTG ACATCAAGGC CAAATTTGCG
CCTTACCAGG TGAATAAGGC ACTGATGAAC AAGGCCGGAG CCAGCTATTT TATGCACTGT
CTGCCTGCGC ATCGGGGGCT GGAAGTGACC GATGAGGTGA TGGACGGTGA AGGTTCCCTC
ATCCTGGATC AGGCCGAGAA CCGCATGCAC GCACAAAACG CAGTGTTGGT CACACTGCTG
GGATAA
|
|---|
| Protein sequence | MKHLISIKEL TQKQMLDLLT LAKEIKADPA KYSRALAGKS VVMLFEKPSL RTRVSFDIGI
NKLGGHCLYL DQQNGALGKR ESVKDFASNL SCWADAIVAR TFAHETVEGL AKYGRVPVIN
ALSDLYHPCQ GLADFLSLAE KFDDLSKVRL AYVGDGNNVS HSLMYGAALL GATMTVICPP
GHFPDGFEVQ QAQQIAAAHG GKLVLTSDIN AIEGHDAVYT DTWISMGDNT ALTDIKAKFA
PYQVNKALMN KAGASYFMHC LPAHRGLEVT DEVMDGEGSL ILDQAENRMH AQNAVLVTLL
G
|
|---|
| |