| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0248 |
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| Symbol | |
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| ID | 4602504 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 271790 |
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| End bp | 273766 |
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| Gene Length | 1977 bp |
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| Protein Length | 658 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639779569 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_926129 |
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| Protein GI | 119773389 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00203639 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0443843 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCCGG AACTTGGACA CTTTGCGCTG ATAACAGGAC TGGCATTTGC CTTACTGCTC
AGCTGCGTGC CGCTCATTGG GGTAGCGCGC AAAGATCAGT ATCTGGTGCG TTACGCCTGG
CCATTGGCTT ACGGTATGTT TCTGTTCATT GCACTGTCTG TTGTGACTCT GGCGTACAGC
TTCGCGGTCG ATGATTTTTC TGTTGCTTAC GTGGCACACC ATTCCAATTC TCAGCTTCCG
AGCTTCTTCA AGATAGCGGC CGTTTGGGGT GGTCACGAAG GCTCTCTGCT GTTTTGGGTA
TTCTCCTTGT CTGTATGGGC TGCAGCCGTA GCCAAGTTCA GCAAAGGACT GGAAGAAGTC
TTTACCGCCC GGGTACTGGC GGTGCTCGGT ATGATTACTG TGGGCTTCAC CCTGTTTATG
CTGCTGACCT CCAGCCCGTT CGAGCGCCTA TTCCCTGCGC CGATGGAAGG TCGAGACCTA
AACCCCATGC TGCAGGACGT AGGCCTTATC TTCCACCCAC CCATGCTGTA TCTGGGATAT
GTGGGCTTCT CTGTCAGCTT TGCCTTTGCG ATTGCCGCAC TGCTCAGTGG TCGTCTCGAT
TCTGCCTGGG CACGCTGGAG CCGTCCCTGG ACACTGGCCG CCTGGATTTT CCTGACCGGT
GGTATTGCGC TGGGTTCCTG GTGGGCTTAC TACGAGCTCG GCTGGGGTGG CTGGTGGTTC
TGGGATCCGG TCGAAAACGC GTCCTTTATG CCATGGCTGA TTGGTACCGC ACTGGTGCAC
TCACTGATTG TGACCGAAAA GCGCGGTACC TTCCGTAACT GGACGGTACT GCTGTCTATC
TTTGCCTTCT CTTTGAGTTT GCTCGGTACC TTTATTGTGC GTTCCGGCGT GCTGACATCG
GTGCACTCAT TCGCTGCCGA TCCAAGCCGC GGTATGTTTA TTCTCTTACT GCTTGGTCTT
GCTATTGGTG GCTCACTCAC ACTGTTTGCG TTCCGTGCCA GTGAAATGAG CAGTCCAGCG
AAGTTTGAAC TCTGGTCAAA AGAAACCATG CTGCTGGTAT GTAACCTGCT GCTGACCGTT
GCCTGTGGCA CAGTGCTGCT GGGTACTCTT TACCCACTGC TGATTGATGC GCTGGGCATG
GGTAAGATTT CTGTAGGCCC ACCATACTTC AATGCCGTAT TTGTGCCCAT CATCCTGGTG
ATGTTTGTGT TCATGGGTAT CGGTCCTATT ATCCGCTGGA AGAAAGCGAA AGAAGGTGAA
GTGAAGCGTC AGCTGTTGAT CCCGGCTATC GTCTCTGCGG TCGTAGGTAT TGCAGTGCCT
TTCATCGCTG GTGGCGCATT CAACGCCTGG GTTGCTTTGG GTATCGGCGC TGCCGTGTGG
ATCACCCTGG CCACACTTCG TGCAGGCTAT AACATCGTCA AGACCAACGA AGGCCTGAGT
CTTGCGCGCA TGGGTCGCAG TCAGTTGGGC ATGATCATCG CTCACCTGGG GATTGCGGTC
TCGGTCGTGG GTGGCACCAT GGTGTCCAAC TACTCAATCG AGAAGAGTGT GCGTATGGGT
CCGGGTATCA GCCATGAGCT GGCCGGTTAT ACCTTCAAGT TTACTGAGAC CAAAAACGTG
GTAGGTCCGA ACTACACCGC ACAACAAGGT CAGATAGAGG TGTATAAGGG AGACAAGTTC
CTGACGCTCC TCAAGCCCGA TCGTCGTCAG TACAACGTGC GCACCATGGA CATGACCGAA
GCCGGGATCG ACTGGGGTCT GTTCCGAGAT CTGTATGTCA CCATGGGTGA CCCTATCAGT
GCCACCGAGT ACGCGGTGCG TTTGAACTAC AAGCCATTCG TTCGTTGGTT ATGGTTCGGC
GGTATCTTTA TGATGGTGGG TGGTTTCTTT GCGGCCTCGG ATAAACGTTA CCGCGTAAAG
GCAGCGGCTT CCGACAAAGC TAAAGAAGCG ACTAAAGGTA ACCTGGCTAC AGCCTGA
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| Protein sequence | MIPELGHFAL ITGLAFALLL SCVPLIGVAR KDQYLVRYAW PLAYGMFLFI ALSVVTLAYS
FAVDDFSVAY VAHHSNSQLP SFFKIAAVWG GHEGSLLFWV FSLSVWAAAV AKFSKGLEEV
FTARVLAVLG MITVGFTLFM LLTSSPFERL FPAPMEGRDL NPMLQDVGLI FHPPMLYLGY
VGFSVSFAFA IAALLSGRLD SAWARWSRPW TLAAWIFLTG GIALGSWWAY YELGWGGWWF
WDPVENASFM PWLIGTALVH SLIVTEKRGT FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS
VHSFAADPSR GMFILLLLGL AIGGSLTLFA FRASEMSSPA KFELWSKETM LLVCNLLLTV
ACGTVLLGTL YPLLIDALGM GKISVGPPYF NAVFVPIILV MFVFMGIGPI IRWKKAKEGE
VKRQLLIPAI VSAVVGIAVP FIAGGAFNAW VALGIGAAVW ITLATLRAGY NIVKTNEGLS
LARMGRSQLG MIIAHLGIAV SVVGGTMVSN YSIEKSVRMG PGISHELAGY TFKFTETKNV
VGPNYTAQQG QIEVYKGDKF LTLLKPDRRQ YNVRTMDMTE AGIDWGLFRD LYVTMGDPIS
ATEYAVRLNY KPFVRWLWFG GIFMMVGGFF AASDKRYRVK AAASDKAKEA TKGNLATA
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