Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0247 |
Symbol | |
ID | 4602503 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 270148 |
End bp | 271401 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 639779568 |
Product | cytochrome c-type biogenesis protein CcmH |
Protein accession | YP_926128 |
Protein GI | 119773388 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4235] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00131868 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0142008 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCACAT TCTGGATTTT GATTGCATTT GTTGTGCTGA TCGGCCTCAT GCTGATCTGG GTGCCCCACT TCCGGCAGCA GCGTCTGTTA GAGGCTGAAG AAGCTGGCGT GCGTAAGCAA ACCAACCTTG AACTCTTTAA TGAACGTTTG GCGATTCTCG AAAAAGAACT GGCTGAAGAT CTGTTGGATA ATCAGGAATT CGAGGCGCTG AAGAAAGAAC TCGAAATTAG CCTGCTGCAA GACATCAAGC AGGGCAGTGA CGAGTCACTG GTCAACACAG TTAAACCCAA AGGGTTGCTG TGGCCTGTGG TGATGTCCGT TACGCTGCTT GGTATTTCCG GCTACATGTA TCAGCACCTT GGCCAATATG AGAATGTGGC CAATCCTCCC CGCGCCGCCA ATCCCCATGA AGGTATGACC GCCGAACAAA TTATGTCGCA GCGGGTACAA ATGATGGAAA TGGCAGTACA GGCTGAACCC GATAACAGCC AGGCCTGGTT TAATCTGGGT CACGCCTATA TTTCTGCGAA CCGGTTTGAC GAAGCCGTAA ACGCTTTCGA TAAGGTAATG GCACTGGTAG GTACCCATGC CGAGTTGCTG GGCCCTAAAG CCACCGCCCT TTATTACAAG AACAATCAAC AGATGTCGGC TGAGATACAG GCATTAGTCG ACCAGTCTCT GGCACTCGAT CCTCAGGATC CATCGACTCT GCTGTTGGTG GGTATGGATT CTTTCTTTAC CGCCAACTAC CAAAAGGCTA TCGACGCCTG GCAAAGCATA TTGTCTACCC AACGCACCGA TATCGATAGA ACAGCACTGA TGAACGCCAT CGAAACCGCC CGTATGAAGA TGGCGGCCGA GTCAGGCGAG ATGCCTCAGG ACAGCGTTCA CCAACCTGTT GCCAAGGCAG TGCCAACGGT AACGGTTCAA ATTTCGGTAT CACCTGAGCT TGCCGCCAAT GTCAGCGATT CCGACATGCT GTTTATCTTC GCCCGTGCTA CCGAAGGCCC GAAAGTGCCA CTGGCGGCGA CCAAGATCAG CGCCAAAGCA CTGCCTGCCA CTATCACTCT GGACGATAGC ACCAATATGG GCGGCGATGT GAAGCTCAGC AGCGCCAAGC AGGTTGAGAT CATTGCGGTA TTGTCGAAGC ACGGCAGCGT TAAGCCTCAA TCAGGAGACC TTAAAGGCAG CCTTAATGGG GTCGATGTGG GTGGCGAGTC TGTGAACCTG GTACTGGATA CCTTGGTGCA ATAA
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Protein sequence | MTTFWILIAF VVLIGLMLIW VPHFRQQRLL EAEEAGVRKQ TNLELFNERL AILEKELAED LLDNQEFEAL KKELEISLLQ DIKQGSDESL VNTVKPKGLL WPVVMSVTLL GISGYMYQHL GQYENVANPP RAANPHEGMT AEQIMSQRVQ MMEMAVQAEP DNSQAWFNLG HAYISANRFD EAVNAFDKVM ALVGTHAELL GPKATALYYK NNQQMSAEIQ ALVDQSLALD PQDPSTLLLV GMDSFFTANY QKAIDAWQSI LSTQRTDIDR TALMNAIETA RMKMAAESGE MPQDSVHQPV AKAVPTVTVQ ISVSPELAAN VSDSDMLFIF ARATEGPKVP LAATKISAKA LPATITLDDS TNMGGDVKLS SAKQVEIIAV LSKHGSVKPQ SGDLKGSLNG VDVGGESVNL VLDTLVQ
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