| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0244 |
|---|
| Symbol | |
|---|
| ID | 4602500 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 268044 |
|---|
| End bp | 268730 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639779565 |
|---|
| Product | heme exporter protein CcmB |
|---|
| Protein accession | YP_926125 |
|---|
| Protein GI | 119773385 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2386] ABC-type transport system involved in cytochrome c biogenesis, permease component |
|---|
| TIGRFAM ID | [TIGR01190] heme exporter protein CcmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00742888 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00325312 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAG GCATTAGTTT TACCCAGGCA TTTGGCACTG TACTCAAGCG GGATTTAAAA
ATTGCCATCC GTCATCGCGG CGATATCTTC AATCCCTTGT TATTTTTTGT GATGGTCGTG
ACCCTGTTCC CATTGGGAAT TGGCCCTGAA CCACAGGTAT TGACCCGCAT TGCTCCCGGC
ATCATTTGGG TAGCTGCGCT GCTGGCGTCC ATGTTATCGC TGGAGCGTTT GTTCAAAGCA
GACTTTGTCG ATGGCTCGCT GGAGCAGATG CTGCTAAGTC CGCAGCCACT GTACATCACA
GTGCTGGCCA AGGTGCTGGC CCACTGGCTG TTAACCGGCG TGCCACTGAT TTTGGTGTCG
CCGCTGCTGG CGGTATTGCT GCATCTGGAA GACAACAGTT ATGGTGCGCT GATGAGCACC
CTGGCGCTGG GTACTCCGGT GCTGAGTCTG CTTGGTGCCA TAGGTGTGGC ACTGACGGTA
GGATTACGTA AAGGCGGCGT ATTACTGAGT TTGTTAATAC TGCCGCTCTA TATTCCGGTA
CTGATTTTTG CGACCAGTGC CATTGATGCA GCGGGAATGA ATTTACCCTA CGATGGCCAG
CTCGCTATAA TAGGTGCCAT GCTGGTTGGG TCTTTAACAC TGGCGCCCTT TGCCGTTGGC
GCCTCTTTAA GAGTGAGTAC TAACTAA
|
|---|
| Protein sequence | MKRGISFTQA FGTVLKRDLK IAIRHRGDIF NPLLFFVMVV TLFPLGIGPE PQVLTRIAPG
IIWVAALLAS MLSLERLFKA DFVDGSLEQM LLSPQPLYIT VLAKVLAHWL LTGVPLILVS
PLLAVLLHLE DNSYGALMST LALGTPVLSL LGAIGVALTV GLRKGGVLLS LLILPLYIPV
LIFATSAIDA AGMNLPYDGQ LAIIGAMLVG SLTLAPFAVG ASLRVSTN
|
|---|
| |