Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0243 |
Symbol | |
ID | 4602499 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 267296 |
End bp | 268042 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639779564 |
Product | heme exporter protein CcmC |
Protein accession | YP_926124 |
Protein GI | 119773384 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0755] ABC-type transport system involved in cytochrome c biogenesis, permease component |
TIGRFAM ID | [TIGR01191] heme exporter protein CcmC |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00291797 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000734181 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTGGAAGT GGTTACATCC TTACGCCGAT CCCGAGCGTG CTTACAAGTT ATCAGACAAA CTCTTACCCT GGTTTGCCTT CCTGGCGTTA GCCTTTATCG CCACTGGCAC CACCTGGGGA TTGCTGTTTG CGCCGACAGA CTATCAACAG GGTGACAGCT ATCGCATCAT CTTTATTCAC GTGCCAGCGG CATCCATGTC GATGGCAGCG TATATGGGGA TGGCCACCGC CGCCTTTATT GGTCTGGTAT GGCAAATTAA AGCAGCTGAT TGGACCGCCG CAGCCATCGC GCCAATCGGT GCTGTGGTCA CCTTTATCGC CCTCTTCACC GGCGCAACCT GGGGCAAGCC GATGTGGGGC ACATGGTGGG TATGGGATGC ACGCCTGACT TCTGAGTTGG TGCTGCTGTT CCTGTATTTG GGCGTGATTG CGCTTTATGC ATCTTTCGAA GACAAGGTGC TGGCCGCCCG GGCCGCTGGT ATTCTGGCGA TTGTGGGTGT GATTAACATC CCCATCATCA AGTATTCAGT GGAATGGTGG AGCTCACTGC ATCAGCCATC CACGATTCGA ATCACCGAAA AATCCACCAT GTCCAGCGAC ATGCTGTACC CTTTGCTCAT TAATATTGTG GGCTTTGGCT TGATGATCGG TGCTTTGACC CTGGTTCGAT TCAAGGCCGA GATCCTGGCA CGCAATGCCA TGCGTCCCTG GGTGCGCGAG ATGGCCTTGG CTCAAGGAGT TAAATAA
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Protein sequence | MWKWLHPYAD PERAYKLSDK LLPWFAFLAL AFIATGTTWG LLFAPTDYQQ GDSYRIIFIH VPAASMSMAA YMGMATAAFI GLVWQIKAAD WTAAAIAPIG AVVTFIALFT GATWGKPMWG TWWVWDARLT SELVLLFLYL GVIALYASFE DKVLAARAAG ILAIVGVINI PIIKYSVEWW SSLHQPSTIR ITEKSTMSSD MLYPLLINIV GFGLMIGALT LVRFKAEILA RNAMRPWVRE MALAQGVK
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