Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0238 |
Symbol | |
ID | 4602494 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 264078 |
End bp | 265067 |
Gene Length | 990 bp |
Protein Length | 329 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 639779559 |
Product | DNA-directed RNA polymerase subunit alpha |
Protein accession | YP_926119 |
Protein GI | 119773379 |
COG category | [K] Transcription |
COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00110593 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000111386 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGCAGGGTT CTGTTACAGA ATTTCTTAAA CCGCGTCTCG TGGACATCGA GCAGGTTAGC CCAACTCGTG CCAAAGTTAC CCTGGAACCG CTTGAGCGTG GTTTCGGTCA CACTTTAGGT AACGCGTTGC GTCGCATCCT TCTGTCGTCC ATGCCTGGCT GCGCGGTCAC CGAAGTTGAA ATCGACGGTG TACTGCACGA ATACAGCAGC AAGGAAGGCG TTCAGGAAGA CATCCTCGAG ATCTTGTTGA ACCTGAAAGG TTTGGCAGTG ATTCTTGAGG GCAAAGACGA GGCTATGCTC ACTCTGAGCA AGTCCGGCGC AGGCCCTGTT ACTGCAGCAG ACATCACCCA TGATGGTGAT GTTACTATCG CCAACCCTGA TCATGTTATC TGTCACCTGA CCGGTAATCA TGACATCAGC ATGCGTATCC GCGTTGAGCG TGGTCGTGGT TATGTGCCGG CTTCTGCCCG TGCACAGAAC GAAGACGATG ATCGCCCAAT CGGTCGTCTG CTGGTTGACG CTTCTTTCTC ACCGGTTGCC CGTATTGCCT ACAATGTAGA AGCGGCCCGT GTTGAGCAGC GTACTGACCT GGACAAGCTG GTAATCGATA TGACCACTAA TGGTACAATC GATCCAGAAG AGGCTATCCG TCGCTCTGCA ACTATTCTGG CTGAACAGCT GGATGCGTTT GTAGAACTGC GTGATGTGTC TGTTCCAGAG CAGAAGGAAG AGAAGCCAGA GTTCGATCCA ATCCTGCTGC GTCCTGTCGA CGATTTAGAG CTTACTGTAC GTTCGGCCAA CTGCTTGAAG GCCGAAGCGA TTCATTACAT CGGTGATCTG GTTCAACGCA CAGAAGTTGA GCTGCTCAAG ACTCCTAACC TGGGTAAGAA ATCTCTTACC GAGATCAAGG ACGTATTGGC TTCTCGCGGT CTGTCGTTGG GTATGCGTCT GGAAAACTGG CCTCCAGCCA GCTTGGCAGA CGACCTGTAA
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Protein sequence | MQGSVTEFLK PRLVDIEQVS PTRAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE IDGVLHEYSS KEGVQEDILE ILLNLKGLAV ILEGKDEAML TLSKSGAGPV TAADITHDGD VTIANPDHVI CHLTGNHDIS MRIRVERGRG YVPASARAQN EDDDRPIGRL LVDASFSPVA RIAYNVEAAR VEQRTDLDKL VIDMTTNGTI DPEEAIRRSA TILAEQLDAF VELRDVSVPE QKEEKPEFDP ILLRPVDDLE LTVRSANCLK AEAIHYIGDL VQRTEVELLK TPNLGKKSLT EIKDVLASRG LSLGMRLENW PPASLADDL
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