Gene Sama_0238 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0238 
Symbol 
ID4602494 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp264078 
End bp265067 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content52% 
IMG OID639779559 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_926119 
Protein GI119773379 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00110593 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000111386 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGCAGGGTT CTGTTACAGA ATTTCTTAAA CCGCGTCTCG TGGACATCGA GCAGGTTAGC 
CCAACTCGTG CCAAAGTTAC CCTGGAACCG CTTGAGCGTG GTTTCGGTCA CACTTTAGGT
AACGCGTTGC GTCGCATCCT TCTGTCGTCC ATGCCTGGCT GCGCGGTCAC CGAAGTTGAA
ATCGACGGTG TACTGCACGA ATACAGCAGC AAGGAAGGCG TTCAGGAAGA CATCCTCGAG
ATCTTGTTGA ACCTGAAAGG TTTGGCAGTG ATTCTTGAGG GCAAAGACGA GGCTATGCTC
ACTCTGAGCA AGTCCGGCGC AGGCCCTGTT ACTGCAGCAG ACATCACCCA TGATGGTGAT
GTTACTATCG CCAACCCTGA TCATGTTATC TGTCACCTGA CCGGTAATCA TGACATCAGC
ATGCGTATCC GCGTTGAGCG TGGTCGTGGT TATGTGCCGG CTTCTGCCCG TGCACAGAAC
GAAGACGATG ATCGCCCAAT CGGTCGTCTG CTGGTTGACG CTTCTTTCTC ACCGGTTGCC
CGTATTGCCT ACAATGTAGA AGCGGCCCGT GTTGAGCAGC GTACTGACCT GGACAAGCTG
GTAATCGATA TGACCACTAA TGGTACAATC GATCCAGAAG AGGCTATCCG TCGCTCTGCA
ACTATTCTGG CTGAACAGCT GGATGCGTTT GTAGAACTGC GTGATGTGTC TGTTCCAGAG
CAGAAGGAAG AGAAGCCAGA GTTCGATCCA ATCCTGCTGC GTCCTGTCGA CGATTTAGAG
CTTACTGTAC GTTCGGCCAA CTGCTTGAAG GCCGAAGCGA TTCATTACAT CGGTGATCTG
GTTCAACGCA CAGAAGTTGA GCTGCTCAAG ACTCCTAACC TGGGTAAGAA ATCTCTTACC
GAGATCAAGG ACGTATTGGC TTCTCGCGGT CTGTCGTTGG GTATGCGTCT GGAAAACTGG
CCTCCAGCCA GCTTGGCAGA CGACCTGTAA
 
Protein sequence
MQGSVTEFLK PRLVDIEQVS PTRAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE 
IDGVLHEYSS KEGVQEDILE ILLNLKGLAV ILEGKDEAML TLSKSGAGPV TAADITHDGD
VTIANPDHVI CHLTGNHDIS MRIRVERGRG YVPASARAQN EDDDRPIGRL LVDASFSPVA
RIAYNVEAAR VEQRTDLDKL VIDMTTNGTI DPEEAIRRSA TILAEQLDAF VELRDVSVPE
QKEEKPEFDP ILLRPVDDLE LTVRSANCLK AEAIHYIGDL VQRTEVELLK TPNLGKKSLT
EIKDVLASRG LSLGMRLENW PPASLADDL