| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0214 |
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| Symbol | rplD |
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| ID | 4602470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 252888 |
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| End bp | 253493 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639779535 |
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| Product | 50S ribosomal protein L4 |
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| Protein accession | YP_926095 |
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| Protein GI | 119773355 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0088] Ribosomal protein L4 |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000322212 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000755245 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGGAATTGG TATTGAAAGA CGCCTCTCGC GCTCTTGAAG TTTCCGAGAC TACCTTCGGC
CGTGACTTTA ACGAAGCACT GGTTCATCAG GTAGTTGTAG CTTACGCTGC GAACGCGCGT
CAGGGCACTC GTGCTCAAAA GACTCGCGCT GAAATCACTG GCACTGGCAA AAAGCCATGG
CGCCAGAAAG GTACCGGTCG CGCTCGTGCC GGCGGTATCA AAGGTCCACT GTGGCGTGGT
GGTGGCGTAA CATTCGCTGC TAAAACCCAA GATCACAGCC AAAAAGTAAA CAAGAAGATG
TACCGCGGCG CTCTGATGAG CATTCTGTCC GAGCTGGTAC GTCAAGAGCG TCTGGTTGTA
GTTGAACAAT TCGCCGTTGA AGCTCCTAAA ACTAAAGAGC TGAAGGCCAA GCTGAAAGCT
ATGGACCTGG AAGACGTGCT GATTGTGACT GCAGAAGTTG ATGAGAACCT GTTCCTGGCT
GCTCGCAACC TGTACAAGGT TGACGTGCGT GACGTAGCAG GTCTGGATCC AGTAAGCCTG
ATCGCGTTCA ACAAGGTTCT GGTAACTGCT GACGCTGTGA AGCAAATCGA GGAGATGCTG
GCATGA
|
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| Protein sequence | MELVLKDASR ALEVSETTFG RDFNEALVHQ VVVAYAANAR QGTRAQKTRA EITGTGKKPW
RQKGTGRARA GGIKGPLWRG GGVTFAAKTQ DHSQKVNKKM YRGALMSILS ELVRQERLVV
VEQFAVEAPK TKELKAKLKA MDLEDVLIVT AEVDENLFLA ARNLYKVDVR DVAGLDPVSL
IAFNKVLVTA DAVKQIEEML A
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