Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0206 |
Symbol | rpoB |
ID | 4602462 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 238654 |
End bp | 242682 |
Gene Length | 4029 bp |
Protein Length | 1342 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639779527 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_926087 |
Protein GI | 119773347 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.255589 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000288245 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGTTTACT CCTATTCTGA AAAGAAGCGT ATTCGCAAAG ACTTTGGTAA GCGTCCGCAA GTGCTGGACA TCCCTTACCT GTTGTCTATT CAGTTAGATT CTTTCAAGAA GTTCACCGAT CAAGATCCTA CCGGTGAGCG CGGTTTGGAA GCCGCCTTCC GCAGCGTTTT CCCCATCAAG AGCTTTTCCG GTAACTCCGA GCTGCAATAT GTCAGCTATA AGCTGGGTGA GCCTGTATTT GATGTGAAAG AATGCCAGAT CCGTGGTGTT ACTTATTCTG CCCCCCTGCG CGTAAAACTG CGCATGGTAT TGTTTGACCG TGAAGCCGCT CCTGGCACGG TTAAAGACAT CAAAGAACAA GAAGTCTACA TGGGGGATAT CCCTCTGATG ACTGAAAACG GTACCTTCGT TATCAACGGT ACCGAGCGTG TTATCGTTTC TCAGCTGCAC CGCTCTCCAG GTGTGTTCTT CGACCACGAC CGTGGTAAGA CTCACTCTTC AGGCAAGGTG CTGTATAACG CGCGTATTAT CCCTTACCGT GGTTCCTGGC TGGACTTCGA ATTCGATCCG AAGGACGCCC TGTTCGTCCG TATCGACCGT CGTCGTAAAC TGCCTGCAAC CATTATCCTG CGTGCCCTGG ATTTCTCTAC TCAGGACATC CTGGATATCT TCTTTGAGCG CGTAGACTTC ACCATCAAGA AAGACTCTCT GGTGATGAAG CTGCTGCCTG AGCGTCTGCG CGGTGAAACC GCCAGCTACG ACATCAAAGA TGCCGAAGGC AACATCGTGG TTGAAAAGGG CCGTCGTATC ACTGCCCGTC ACATTCGCCA GCTGGAAAAA ACCAACACCA CTGAACTGGA AGTACCGGTT GAGTACATCG TTGGTAAGAT TGCCGCCCAG GACTATATCG ATCCGGATAC CGGTGAAGTG TTGGTGACTG CCAACAACGA AATCCGTCTG GAAGATCTGG CTCAGCTGTC GCTGGCCGGT ATCAAGGACA TCTCCACGCT CTATATCAAC GAGCTGGACC ACGGTGCCTA CATCTCCGAC ACCCTGCGTA TCGATTCCAC CACCAACCGC CTTGAGGCGC TGGTTGAAAT CTACCGCATG ATGCGTCCTG GCGAGCCACC AACCAAGGAT GCTGCCGAAG CCCTGTTCCA GAACCTGTTC TTCAGCGAAG AGCGTTATGA CCTGTCCAAA GTAGGTCGTA TGAAGTTCAA CCGTCGTCTG GAAATCGCCG ATGACGTGGG CACTGGCGTT CTGTCTAACG ACGATATCGT TGCGGTGATG AAGAAGATCA TCGAAATCCG TAACGGTAAC GACGAAGTGG ACGATATCGA CCACTTGGGT AACCGTCGTA TCCGCTCTGT GGGCGAAATG GCCGAGAACC AGTTCCGTGT AGGTCTGGTA CGTGTTGAGC GCGCTGTACG TGAGCGTCTG TCTCTGGGCG ATCTGAACGA GCTGATGCCT CAGGACCTCA TCAACGCCAA GCCGATTTCT GCGGCGGTGA AAGAGTTCTT CGGTTCTTCT CAGCTGTCTC AGTTTATGGA CCAGAACAAC CCGCTGTCTG AAGTAACCCA CAAGCGCCGT ATTTCGGCCC TGGGTCCAGG CGGTCTGACC CGTGAGCGCG CCGGCTTCGA AGTTCGCGAC GTACACCCAA CTCACTACGG TCGTCTGTGT CCAATTGAGA CCCCTGAAGG TCCAAACATT GGTCTGATCA ACTCGCTGGC AACCTTCGCC CGCACCAACT CTTACGGGTT CCTGGAAACT CCATACCGTA AAGTGGTTGA TGGCGTGGTA ACCGACGACG TTGAATACCT GTCAGCCATC GAAGAAGGCC GCTATGTGAT TGCACAGGCC AACATCGAGC TGGACGGCGA AGGTCGTATC CTGGAAGAGC AGGTTGCCTG TCGTCATAAG GGTGAATCTA CCTTTATGCG CGCCTCTGAC ATCCAGTATA TGGACGTATC GCCACAACAG ATCATCTCTG TTGCAGCATC TTTGATCCCG TTCCTGGAAC ACGACGACGC CAACCGCGCA CTCATGGGCG CGAACATGCA ACGTCAGGCC GTTCCAACCC TGCGCTCTGA AAAGCCGCTG GTAGGTACCG GTATTGAACG TGCTCTGGCT GTGGACTCAG GCGTAGTTGT TGCTGCCAAG CGTGGCGGTG TGATTGACTA CGTTGATGCC AGCCGCATCG TGGTTAAGGT GAATGAAGAT GAGCTGCGCC CAGGCGAAGC CGGTATCGAC ATCTACAACC TGACCAAATA CACCCGTTCT AACCAGAACA CCTGTATCAA CCAGCGTCCT TGCTGTCAGG TAGGCGACCC AATCGTACGT GGCGACGTAC TGGCTGACGG TCCTTCTACC GATCTGGGTG ATCTGGCTCT GGGTCAGAAC ATGCGTGTGG CATTCATGCC CTGGAACGGT TACAACTTCG AAGACTCCAT CCTCATCTCT GAGCGTGTAG TTCAGGACGA CCGTTTCACC ACCATTCACA TTCAGGAACT GTCTTGTATC GCCCGTGATA CCAAGCTCGG TAGCGAAGAG ATCACAGCTG ACATTCCAAA CGTGGGTGAG TCTGCTCTGT CCAAGCTCGA CGAGTCCGGT ATCGTTTATA TCGGTGCTGA AGTGAAAGGC GGCGACATTC TGGTTGGTAA GGTAACGCCA AAAGGCGAAA CCCAGCTGAC GCCGGAAGAG AAACTGCTGC GCGCCATCTT CGGTGAAAAA GCCTCTGATG TTAAGGATAG CTCTCTGCGC GTTCCTAACT CAGTGACAGG TACCGTAATC GACGTTCAGG TATTTACCCG TGACGGCGTT GAGAAAGACA AGCGTGCCAT CGAAATCGAA GAGATGCACA TCGCTCAGGC CCGTAAGGAC CTGTCCGAAG AGTTCAAGAT CCTCGAAGAG GGCGTTCTGA GCCGTGCCCG TAACCTGCTG CTTGCCGGTG GTTACACTCA GGCCCAGCTG GATGCTATCC CACGCAAGGA ACTGCTGACT CAGGTTATCG ATGACGAGAC CAAGCAGACC GAACTTGAGC AACTGGCTGA ACAGCACGAA GAGCTGAAAG CCGACTTCGA CAAGAAGTTT GAGCACAAGC GTCGCAAGAT CACCCAGGGC GATGACCTGG CTCCAGGCGT ACTGAAGATC GTTAAGGTTT ACCTGGCGGT TAAGCGTACC ATCCAGCCTG GTGACAAGAT GGCCGGTCGT CACGGTAACA AGGGTGTGAT CTCCAAGATC TGTCCTATCG AAGATATGCC ATACGACGAG CAGGGTAATC CTGTGGACAT CGTACTGAAC CCACTGGGTG TACCATCTCG TATGAACATC GGTCAGGTTC TGGAAGTGCA CATGGGTGCA GCTGCCAAGG GTATCGGTAA CCGCATTCAG GCCATGCTCG AAGAGCAGCG TGAAGTGGCC GAGCTGCGTG GCTATATCAA GCAGGCTTAC GATCTGGGTG AAACCCAGCA GAAAGTGGAT ATCGAGTCCT TTACCGACGA AGAAGTTATC CGCCTGGCCA AGCACCTGAA AGATGGTCTG CCAACTGCGA CTCCAGCGTT CGACGGCGCC AAAGAGAAAG AGATCAAGCA GATGCTTGAA CTCGCCGGCC TGCCGACTTC TGGTCAGCTG CGTCTGTTTG ATGGTCGTAC CGGTAATGCG TTCGAGCGTG AAGTGACCGT AGGTTACATG TACATGCTCA AGCTGAACCA CCTGGTCGAC GACAAGATGC ACGCCCGTTC TACCGGTTCT TACAGTCTGG TTACCCAGCA GCCACTCGGC GGTAAGGCCC AGTTTGGTGG TCAGCGTTTC GGTGAGATGG AAGTGTGGGC CCTGGAAGCA TACGGTGCTG CGTACACCCT CCAGGAAATG CTCACTGTTA AGTCCGATGA CGTGAACGGC CGTACTCAGA TGTATAAGAA CATCGTGGAC GGAAACCACC AGATGCAACC TGGTATGCCT GAGTCCTTCA ACGTACTGCT GAAGGAGATC CGTTCGCTCG GTATCAACAT CGAGCTGGAT CAAGAGTAA
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Protein sequence | MVYSYSEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFKKFTD QDPTGERGLE AAFRSVFPIK SFSGNSELQY VSYKLGEPVF DVKECQIRGV TYSAPLRVKL RMVLFDREAA PGTVKDIKEQ EVYMGDIPLM TENGTFVING TERVIVSQLH RSPGVFFDHD RGKTHSSGKV LYNARIIPYR GSWLDFEFDP KDALFVRIDR RRKLPATIIL RALDFSTQDI LDIFFERVDF TIKKDSLVMK LLPERLRGET ASYDIKDAEG NIVVEKGRRI TARHIRQLEK TNTTELEVPV EYIVGKIAAQ DYIDPDTGEV LVTANNEIRL EDLAQLSLAG IKDISTLYIN ELDHGAYISD TLRIDSTTNR LEALVEIYRM MRPGEPPTKD AAEALFQNLF FSEERYDLSK VGRMKFNRRL EIADDVGTGV LSNDDIVAVM KKIIEIRNGN DEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL SLGDLNELMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT RERAGFEVRD VHPTHYGRLC PIETPEGPNI GLINSLATFA RTNSYGFLET PYRKVVDGVV TDDVEYLSAI EEGRYVIAQA NIELDGEGRI LEEQVACRHK GESTFMRASD IQYMDVSPQQ IISVAASLIP FLEHDDANRA LMGANMQRQA VPTLRSEKPL VGTGIERALA VDSGVVVAAK RGGVIDYVDA SRIVVKVNED ELRPGEAGID IYNLTKYTRS NQNTCINQRP CCQVGDPIVR GDVLADGPST DLGDLALGQN MRVAFMPWNG YNFEDSILIS ERVVQDDRFT TIHIQELSCI ARDTKLGSEE ITADIPNVGE SALSKLDESG IVYIGAEVKG GDILVGKVTP KGETQLTPEE KLLRAIFGEK ASDVKDSSLR VPNSVTGTVI DVQVFTRDGV EKDKRAIEIE EMHIAQARKD LSEEFKILEE GVLSRARNLL LAGGYTQAQL DAIPRKELLT QVIDDETKQT ELEQLAEQHE ELKADFDKKF EHKRRKITQG DDLAPGVLKI VKVYLAVKRT IQPGDKMAGR HGNKGVISKI CPIEDMPYDE QGNPVDIVLN PLGVPSRMNI GQVLEVHMGA AAKGIGNRIQ AMLEEQREVA ELRGYIKQAY DLGETQQKVD IESFTDEEVI RLAKHLKDGL PTATPAFDGA KEKEIKQMLE LAGLPTSGQL RLFDGRTGNA FEREVTVGYM YMLKLNHLVD DKMHARSTGS YSLVTQQPLG GKAQFGGQRF GEMEVWALEA YGAAYTLQEM LTVKSDDVNG RTQMYKNIVD GNHQMQPGMP ESFNVLLKEI RSLGINIELD QE
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