Gene Sama_0206 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0206 
SymbolrpoB 
ID4602462 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp238654 
End bp242682 
Gene Length4029 bp 
Protein Length1342 aa 
Translation table11 
GC content54% 
IMG OID639779527 
ProductDNA-directed RNA polymerase subunit beta 
Protein accessionYP_926087 
Protein GI119773347 
COG category[K] Transcription 
COG ID[COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit 
TIGRFAM ID[TIGR02013] DNA-directed RNA polymerase, beta subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.255589 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000288245 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGTTTACT CCTATTCTGA AAAGAAGCGT ATTCGCAAAG ACTTTGGTAA GCGTCCGCAA 
GTGCTGGACA TCCCTTACCT GTTGTCTATT CAGTTAGATT CTTTCAAGAA GTTCACCGAT
CAAGATCCTA CCGGTGAGCG CGGTTTGGAA GCCGCCTTCC GCAGCGTTTT CCCCATCAAG
AGCTTTTCCG GTAACTCCGA GCTGCAATAT GTCAGCTATA AGCTGGGTGA GCCTGTATTT
GATGTGAAAG AATGCCAGAT CCGTGGTGTT ACTTATTCTG CCCCCCTGCG CGTAAAACTG
CGCATGGTAT TGTTTGACCG TGAAGCCGCT CCTGGCACGG TTAAAGACAT CAAAGAACAA
GAAGTCTACA TGGGGGATAT CCCTCTGATG ACTGAAAACG GTACCTTCGT TATCAACGGT
ACCGAGCGTG TTATCGTTTC TCAGCTGCAC CGCTCTCCAG GTGTGTTCTT CGACCACGAC
CGTGGTAAGA CTCACTCTTC AGGCAAGGTG CTGTATAACG CGCGTATTAT CCCTTACCGT
GGTTCCTGGC TGGACTTCGA ATTCGATCCG AAGGACGCCC TGTTCGTCCG TATCGACCGT
CGTCGTAAAC TGCCTGCAAC CATTATCCTG CGTGCCCTGG ATTTCTCTAC TCAGGACATC
CTGGATATCT TCTTTGAGCG CGTAGACTTC ACCATCAAGA AAGACTCTCT GGTGATGAAG
CTGCTGCCTG AGCGTCTGCG CGGTGAAACC GCCAGCTACG ACATCAAAGA TGCCGAAGGC
AACATCGTGG TTGAAAAGGG CCGTCGTATC ACTGCCCGTC ACATTCGCCA GCTGGAAAAA
ACCAACACCA CTGAACTGGA AGTACCGGTT GAGTACATCG TTGGTAAGAT TGCCGCCCAG
GACTATATCG ATCCGGATAC CGGTGAAGTG TTGGTGACTG CCAACAACGA AATCCGTCTG
GAAGATCTGG CTCAGCTGTC GCTGGCCGGT ATCAAGGACA TCTCCACGCT CTATATCAAC
GAGCTGGACC ACGGTGCCTA CATCTCCGAC ACCCTGCGTA TCGATTCCAC CACCAACCGC
CTTGAGGCGC TGGTTGAAAT CTACCGCATG ATGCGTCCTG GCGAGCCACC AACCAAGGAT
GCTGCCGAAG CCCTGTTCCA GAACCTGTTC TTCAGCGAAG AGCGTTATGA CCTGTCCAAA
GTAGGTCGTA TGAAGTTCAA CCGTCGTCTG GAAATCGCCG ATGACGTGGG CACTGGCGTT
CTGTCTAACG ACGATATCGT TGCGGTGATG AAGAAGATCA TCGAAATCCG TAACGGTAAC
GACGAAGTGG ACGATATCGA CCACTTGGGT AACCGTCGTA TCCGCTCTGT GGGCGAAATG
GCCGAGAACC AGTTCCGTGT AGGTCTGGTA CGTGTTGAGC GCGCTGTACG TGAGCGTCTG
TCTCTGGGCG ATCTGAACGA GCTGATGCCT CAGGACCTCA TCAACGCCAA GCCGATTTCT
GCGGCGGTGA AAGAGTTCTT CGGTTCTTCT CAGCTGTCTC AGTTTATGGA CCAGAACAAC
CCGCTGTCTG AAGTAACCCA CAAGCGCCGT ATTTCGGCCC TGGGTCCAGG CGGTCTGACC
CGTGAGCGCG CCGGCTTCGA AGTTCGCGAC GTACACCCAA CTCACTACGG TCGTCTGTGT
CCAATTGAGA CCCCTGAAGG TCCAAACATT GGTCTGATCA ACTCGCTGGC AACCTTCGCC
CGCACCAACT CTTACGGGTT CCTGGAAACT CCATACCGTA AAGTGGTTGA TGGCGTGGTA
ACCGACGACG TTGAATACCT GTCAGCCATC GAAGAAGGCC GCTATGTGAT TGCACAGGCC
AACATCGAGC TGGACGGCGA AGGTCGTATC CTGGAAGAGC AGGTTGCCTG TCGTCATAAG
GGTGAATCTA CCTTTATGCG CGCCTCTGAC ATCCAGTATA TGGACGTATC GCCACAACAG
ATCATCTCTG TTGCAGCATC TTTGATCCCG TTCCTGGAAC ACGACGACGC CAACCGCGCA
CTCATGGGCG CGAACATGCA ACGTCAGGCC GTTCCAACCC TGCGCTCTGA AAAGCCGCTG
GTAGGTACCG GTATTGAACG TGCTCTGGCT GTGGACTCAG GCGTAGTTGT TGCTGCCAAG
CGTGGCGGTG TGATTGACTA CGTTGATGCC AGCCGCATCG TGGTTAAGGT GAATGAAGAT
GAGCTGCGCC CAGGCGAAGC CGGTATCGAC ATCTACAACC TGACCAAATA CACCCGTTCT
AACCAGAACA CCTGTATCAA CCAGCGTCCT TGCTGTCAGG TAGGCGACCC AATCGTACGT
GGCGACGTAC TGGCTGACGG TCCTTCTACC GATCTGGGTG ATCTGGCTCT GGGTCAGAAC
ATGCGTGTGG CATTCATGCC CTGGAACGGT TACAACTTCG AAGACTCCAT CCTCATCTCT
GAGCGTGTAG TTCAGGACGA CCGTTTCACC ACCATTCACA TTCAGGAACT GTCTTGTATC
GCCCGTGATA CCAAGCTCGG TAGCGAAGAG ATCACAGCTG ACATTCCAAA CGTGGGTGAG
TCTGCTCTGT CCAAGCTCGA CGAGTCCGGT ATCGTTTATA TCGGTGCTGA AGTGAAAGGC
GGCGACATTC TGGTTGGTAA GGTAACGCCA AAAGGCGAAA CCCAGCTGAC GCCGGAAGAG
AAACTGCTGC GCGCCATCTT CGGTGAAAAA GCCTCTGATG TTAAGGATAG CTCTCTGCGC
GTTCCTAACT CAGTGACAGG TACCGTAATC GACGTTCAGG TATTTACCCG TGACGGCGTT
GAGAAAGACA AGCGTGCCAT CGAAATCGAA GAGATGCACA TCGCTCAGGC CCGTAAGGAC
CTGTCCGAAG AGTTCAAGAT CCTCGAAGAG GGCGTTCTGA GCCGTGCCCG TAACCTGCTG
CTTGCCGGTG GTTACACTCA GGCCCAGCTG GATGCTATCC CACGCAAGGA ACTGCTGACT
CAGGTTATCG ATGACGAGAC CAAGCAGACC GAACTTGAGC AACTGGCTGA ACAGCACGAA
GAGCTGAAAG CCGACTTCGA CAAGAAGTTT GAGCACAAGC GTCGCAAGAT CACCCAGGGC
GATGACCTGG CTCCAGGCGT ACTGAAGATC GTTAAGGTTT ACCTGGCGGT TAAGCGTACC
ATCCAGCCTG GTGACAAGAT GGCCGGTCGT CACGGTAACA AGGGTGTGAT CTCCAAGATC
TGTCCTATCG AAGATATGCC ATACGACGAG CAGGGTAATC CTGTGGACAT CGTACTGAAC
CCACTGGGTG TACCATCTCG TATGAACATC GGTCAGGTTC TGGAAGTGCA CATGGGTGCA
GCTGCCAAGG GTATCGGTAA CCGCATTCAG GCCATGCTCG AAGAGCAGCG TGAAGTGGCC
GAGCTGCGTG GCTATATCAA GCAGGCTTAC GATCTGGGTG AAACCCAGCA GAAAGTGGAT
ATCGAGTCCT TTACCGACGA AGAAGTTATC CGCCTGGCCA AGCACCTGAA AGATGGTCTG
CCAACTGCGA CTCCAGCGTT CGACGGCGCC AAAGAGAAAG AGATCAAGCA GATGCTTGAA
CTCGCCGGCC TGCCGACTTC TGGTCAGCTG CGTCTGTTTG ATGGTCGTAC CGGTAATGCG
TTCGAGCGTG AAGTGACCGT AGGTTACATG TACATGCTCA AGCTGAACCA CCTGGTCGAC
GACAAGATGC ACGCCCGTTC TACCGGTTCT TACAGTCTGG TTACCCAGCA GCCACTCGGC
GGTAAGGCCC AGTTTGGTGG TCAGCGTTTC GGTGAGATGG AAGTGTGGGC CCTGGAAGCA
TACGGTGCTG CGTACACCCT CCAGGAAATG CTCACTGTTA AGTCCGATGA CGTGAACGGC
CGTACTCAGA TGTATAAGAA CATCGTGGAC GGAAACCACC AGATGCAACC TGGTATGCCT
GAGTCCTTCA ACGTACTGCT GAAGGAGATC CGTTCGCTCG GTATCAACAT CGAGCTGGAT
CAAGAGTAA
 
Protein sequence
MVYSYSEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFKKFTD QDPTGERGLE AAFRSVFPIK 
SFSGNSELQY VSYKLGEPVF DVKECQIRGV TYSAPLRVKL RMVLFDREAA PGTVKDIKEQ
EVYMGDIPLM TENGTFVING TERVIVSQLH RSPGVFFDHD RGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDALFVRIDR RRKLPATIIL RALDFSTQDI LDIFFERVDF TIKKDSLVMK
LLPERLRGET ASYDIKDAEG NIVVEKGRRI TARHIRQLEK TNTTELEVPV EYIVGKIAAQ
DYIDPDTGEV LVTANNEIRL EDLAQLSLAG IKDISTLYIN ELDHGAYISD TLRIDSTTNR
LEALVEIYRM MRPGEPPTKD AAEALFQNLF FSEERYDLSK VGRMKFNRRL EIADDVGTGV
LSNDDIVAVM KKIIEIRNGN DEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL
SLGDLNELMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT
RERAGFEVRD VHPTHYGRLC PIETPEGPNI GLINSLATFA RTNSYGFLET PYRKVVDGVV
TDDVEYLSAI EEGRYVIAQA NIELDGEGRI LEEQVACRHK GESTFMRASD IQYMDVSPQQ
IISVAASLIP FLEHDDANRA LMGANMQRQA VPTLRSEKPL VGTGIERALA VDSGVVVAAK
RGGVIDYVDA SRIVVKVNED ELRPGEAGID IYNLTKYTRS NQNTCINQRP CCQVGDPIVR
GDVLADGPST DLGDLALGQN MRVAFMPWNG YNFEDSILIS ERVVQDDRFT TIHIQELSCI
ARDTKLGSEE ITADIPNVGE SALSKLDESG IVYIGAEVKG GDILVGKVTP KGETQLTPEE
KLLRAIFGEK ASDVKDSSLR VPNSVTGTVI DVQVFTRDGV EKDKRAIEIE EMHIAQARKD
LSEEFKILEE GVLSRARNLL LAGGYTQAQL DAIPRKELLT QVIDDETKQT ELEQLAEQHE
ELKADFDKKF EHKRRKITQG DDLAPGVLKI VKVYLAVKRT IQPGDKMAGR HGNKGVISKI
CPIEDMPYDE QGNPVDIVLN PLGVPSRMNI GQVLEVHMGA AAKGIGNRIQ AMLEEQREVA
ELRGYIKQAY DLGETQQKVD IESFTDEEVI RLAKHLKDGL PTATPAFDGA KEKEIKQMLE
LAGLPTSGQL RLFDGRTGNA FEREVTVGYM YMLKLNHLVD DKMHARSTGS YSLVTQQPLG
GKAQFGGQRF GEMEVWALEA YGAAYTLQEM LTVKSDDVNG RTQMYKNIVD GNHQMQPGMP
ESFNVLLKEI RSLGINIELD QE