| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0197 |
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| Symbol | |
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| ID | 4602453 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 230961 |
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| End bp | 231914 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639779514 |
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| Product | biotin--protein ligase |
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| Protein accession | YP_926078 |
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| Protein GI | 119773338 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0340] Biotin-(acetyl-CoA carboxylase) ligase |
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| TIGRFAM ID | [TIGR00121] birA, biotin-[acetyl-CoA-carboxylase] ligase region
[TIGR00122] BirA biotin operon repressor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00143406 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000849017 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAACAGT GGCAACGTAA ACGCGACATT ATTGCGATGC TGTCAACGCA GGAGTTTGTG
TCAGGCGAAG CCCTTGCCGA ACGACTTGGT ATTTCACGTG CTGCGATCAG TAAGCATATT
GATGTGCTTG AAACCTTGGG GCTCAGTATT TACAGCGTTA AAGGCCGTGG CTACAAACTG
GCAACGCCGG TTTCCCTGAT TGATGAATCC AGGCTCAAAC AAGGTATCGA GCGCCGGTGT
TTTTACTTTG ATGACATTCC CAGCACCAAT GCCTTTATGT TATCCCACTC AGAAGAGCTG
GAAAGCGGCG ATGTGTGTAT AGCAGAGCAC CAGTCTGCTG GACGTGGCCG AAGAGGTCGC
AAATGGGTGT CTCCCTATGG CAGCCATCTG TACTTTTCCC TATTTTGGCG TTTAACCGAT
GGCATGAGTA AAGCTATGGG GTTGAGCCTT GTTGTTGGTT GCTCTCTTGC CAAAGTACTT
AAGGACCTCG GTGTTGCAGG TATTGGACTT AAGTGGCCCA ATGACGTCTA TCTGGATGGT
CGCAAACTTG CGGGTATTCT GGTGGAGATG AAAGGTCAGG CCGATAGCAA TTGTGAGCTG
ATTATTGGCA TAGGCGTGAA TATGGCCATG CCGGATGCAC AGGGTGAAGT CATCGATCAG
CCCTGGGCCG ACTTGCAGGG CCTTGCCATG CCGGGTAAAA CCGAGTTTGC AGTACGCTTA
CAACGGCAAC TTCAGGCTGA CCTTGCCTTG TTCGAGCGGG AAGGACTCAA AGCTTTTTTA
GAACGTTGGC AAGCATCAGA TAGCTTTATT GGTAAGCCGG TTAATTTGAT TATGGCAGAT
AAGGTGGAAA CCGGTATTTG CCGGGGCATT GATGAGCAAG GGGCCTTGCT GCTGGAGGTC
GCCGGTGAGA GCAAAAGCTA TATCGGTGGG GAAATCAGTT TGCGGCCAGC GTAA
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| Protein sequence | MEQWQRKRDI IAMLSTQEFV SGEALAERLG ISRAAISKHI DVLETLGLSI YSVKGRGYKL
ATPVSLIDES RLKQGIERRC FYFDDIPSTN AFMLSHSEEL ESGDVCIAEH QSAGRGRRGR
KWVSPYGSHL YFSLFWRLTD GMSKAMGLSL VVGCSLAKVL KDLGVAGIGL KWPNDVYLDG
RKLAGILVEM KGQADSNCEL IIGIGVNMAM PDAQGEVIDQ PWADLQGLAM PGKTEFAVRL
QRQLQADLAL FEREGLKAFL ERWQASDSFI GKPVNLIMAD KVETGICRGI DEQGALLLEV
AGESKSYIGG EISLRPA
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