Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0194 |
Symbol | |
ID | 4602450 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 222531 |
End bp | 223331 |
Gene Length | 801 bp |
Protein Length | 266 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 639779505 |
Product | glutamate racemase |
Protein accession | YP_926075 |
Protein GI | 119773335 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0796] Glutamate racemase |
TIGRFAM ID | [TIGR00067] glutamate racemase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000010481 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0134241 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGAGTTTG GCTTGGCACG TCCCATTCTG GTTTTCGATT CAGGTATAGG TGGTTTGTCG GTGTTGTCTG AGATACGGCA GCTATTGCCA TCCAATGACT TCTATTACCT GTTTGATAAT GCGCGCCTGC CATACGGTGA ACTTACCGAG CAGGTGCTGG TGGACGGCTG TGTTGAGCTT GTTGTGTCAG CAGCTACCAA AATCAACGCC GCTCTGGTGG TTATCGCCTG TAATACGGCC AGTACGCTGG TGTTGCCTGT TTTAAGGAGC AAGTTGACGA TACCCGTCGT AGGAGTCGTT CCTGCAATCA AACCTGCCGC AAGTCATACT CTCTCTGGTC ATATAGGCCT ACTCGCTACT CCAGCCACGG TAAAGCGTTC TTACACCCAT GAGCTGGTCA CCAAATTTGC CAGTGATTGT CAGGTGCATA TGTTTGGCAG TTCGGAACTG GTGATGATGG CAGAGCAAAA GATGGCTGGA GTGCCTGTAG ACATGGAGAA GTTAACCGGA ATTCTGGCGC CCATCCAGGC AACGCAAGTG GATGTGTTGG TACTGGGATG TACGCATTTT CCCATGTTGG CATACGAATT ATCCCAGATA TTGGGGCCCG GGATTAAACT GCTCGATTCG GGCTTTGCCA TTGCCAGCAG GGTGCAGCAT GTACTGGAGG GCTTGGGTGA GCATCAGCAT CCTGCGCCAA ATAGTATGAA GGCGTGGTAT ACCACGCCTT CACTGACACT GGGCTTAATC CAAAGCCTGA CAGACTATGG ATTCAGCGAA ATAGCGCCTT TTACCCATTG A
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Protein sequence | MEFGLARPIL VFDSGIGGLS VLSEIRQLLP SNDFYYLFDN ARLPYGELTE QVLVDGCVEL VVSAATKINA ALVVIACNTA STLVLPVLRS KLTIPVVGVV PAIKPAASHT LSGHIGLLAT PATVKRSYTH ELVTKFASDC QVHMFGSSEL VMMAEQKMAG VPVDMEKLTG ILAPIQATQV DVLVLGCTHF PMLAYELSQI LGPGIKLLDS GFAIASRVQH VLEGLGEHQH PAPNSMKAWY TTPSLTLGLI QSLTDYGFSE IAPFTH
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