| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0177 |
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| Symbol | |
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| ID | 4602433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 206384 |
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| End bp | 207580 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639779488 |
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| Product | general secretion pathway protein L |
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| Protein accession | YP_926058 |
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| Protein GI | 119773318 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3297] Type II secretory pathway, component PulL |
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| TIGRFAM ID | [TIGR01709] general secretion pathway protein L |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.16429 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGTGA GTGAAAGGCT ATTTATCCGC CTGGGCACCA AGGCTCAGGA CAGCTGTTCC
TGGCTGATTT GGTCTGAGCA GGAGCAGGAG ATTATCGCCT CGGGAGAATT ACCGGGCGCC
GAGTCTCTCG CCAGCCTGAC GGAAAGGGCG GGCAACCGTC CGGTAGACAT TCTGGTGCCT
GCGTCCAGCA TGACCCTGAC AGAAATACAT TTGCCTGAAA AAGGCCAGCG TCAGGCGCTC
AAGGCTTTGC CATTCATGCT GGAAGAAAAC ATCGCCCAGG ACGTGGATGA TATGCATTTT
GTGGTGGGGA GCCGCGATGG TGAGCGCCTG TCCGTGGCCG CTGTTGCCCA CGAGCAGATG
CAAACCTGGC TTGGCTGGCT GGCCGACGCT GGTCTGAAGG CGCGCAGGCT GGTACCTGAC
TGTCTGGCTC TGCCACTGGA AAGCTGTGAA TGGGCGGCCA TGTTGATGGG GCAGGAGCTC
CTGGTGCGTA CCGGTAAAGG CTCGGGCCTT AATCTGCCAC AGGACTGGTT GCCGGTGGCC
TTGCCCATGA TGCTTGCCGA TAAAGATACG GCGCCTTCAG TGGCCACTTA CAACGACATG
AATATCCCCG GCGCCGATGT CAAACCGCAA ACCCTGGACC TGCCCATGCT GGTGCTGGCC
CGTGGCGTAT TGCAGGCGCC GATGAATCTG CTGACCGGCA GCTATAAACC AAAGCGTGAG
CTCAGCAAAC ATCTGTTGCA GTGGAAGAGT GCCCTCATCG TCGTGGCGGT AGCGCTCTTG
TTGTCGCTGG TGAACAAGGG ACTGACCATC TACCAGGTTG GCACTCAGGC GGAGGTGCTC
AAGGCCGAGA GTGAGGCAAT CTACCGTCAG GTTGTGCCCG GTTCGAGTCG TATCGTTAAC
CTGCGTTCTC AGTTGGACAA TGAAGTACGC AAGTTATCCG GTAGCGGCAG CGGTGCTGAA
TTTTTCAGCA TGCTGCAACG TTTGAAAACG TCTTTTGCGG CCGTGCCTGA ATTGAAACCC
AACAGCCTGC GTTTTGACAG TGCCCGCAGT GAAATTCGCA TGCAGGTGAC CGCAAAGGAC
TATGCCCAAA TAGAAAAATT CAAAGAACTG GTGGGCAAAG ATTTTGAGCT GGAAGCCGGT
GCCATGAACA GCAGTGACGA GGCAGTCACC AGCACCCTGA CCTTGAGGAG TCGCTAA
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| Protein sequence | MTVSERLFIR LGTKAQDSCS WLIWSEQEQE IIASGELPGA ESLASLTERA GNRPVDILVP
ASSMTLTEIH LPEKGQRQAL KALPFMLEEN IAQDVDDMHF VVGSRDGERL SVAAVAHEQM
QTWLGWLADA GLKARRLVPD CLALPLESCE WAAMLMGQEL LVRTGKGSGL NLPQDWLPVA
LPMMLADKDT APSVATYNDM NIPGADVKPQ TLDLPMLVLA RGVLQAPMNL LTGSYKPKRE
LSKHLLQWKS ALIVVAVALL LSLVNKGLTI YQVGTQAEVL KAESEAIYRQ VVPGSSRIVN
LRSQLDNEVR KLSGSGSGAE FFSMLQRLKT SFAAVPELKP NSLRFDSARS EIRMQVTAKD
YAQIEKFKEL VGKDFELEAG AMNSSDEAVT STLTLRSR
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