| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0175 |
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| Symbol | |
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| ID | 4602431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 204578 |
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| End bp | 205357 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639779486 |
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| Product | general secretion pathway protein J |
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| Protein accession | YP_926056 |
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| Protein GI | 119773316 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.729564 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTTAA GAGAGAATAA GCCTCAGCGG GGTTTTACCC TGATTGAGAT GCTGCTGGCC
ATTGCCATCT TTGCCTTGTT GGGGCTGGCG GCAAATGCGG TGCTGGGGAC TGTGCTGAAA
AATGATGAAG TGACTCAGGA TTTCAGCAAC CGATTGCGTT ACCTGCAGCA GGGATTTGGT
GCCATTGAGC GTGATTTGGG GCAAATGGTG GCCCGCACAC CGAGACTGCT GGAAGGCGGC
CGTGGCACAA CAGTGCTTCA GTCGGGCAGC GATATGCTGG ATAGCGAGAG TGAGGCCTTG
TCCTTTTTTC GCATCGGTTG GCTCAATCCC GATGGCAAGT TGCCCAGAGG CAGTTTGCAG
TCCGTGGCGT ATGTGGTTAT TGCGGGCAAG TTGGAGCGTT GGTACTACCC GTATCCGGAA
CCTGAGTTTG GGGCACAGCC GCTGAAAACC GTGCTCTTTG ATAAGGTGTT GTCGGTGGAG
TACGCCTTCT TTGTGGGTGA TAAGTGGGAA AAGCGTATCG AGGCGACCAC CCTGCCGGAG
GCCATTGCCA TGGAAGTCGA ACTTGAGGGC ATAGGCAAAA TCCAGCGTAA GTTTTTGCTG
CCCAAAGGCA GTATGCCCAA GTCAGATGAT GACGAGGGTA AAGACAAGGG TGACGACAGT
TCAGGTGACG GCACCGAAAA TGGCAGTGGC AACAGCCCGG GTAACGGCTC CGGAGCAGGC
AAGGGCAATC CCGATGAGTC AGAGGACGAT AACGGTCCCC GTGGCAGGGA GGACATCTGA
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| Protein sequence | MSLRENKPQR GFTLIEMLLA IAIFALLGLA ANAVLGTVLK NDEVTQDFSN RLRYLQQGFG
AIERDLGQMV ARTPRLLEGG RGTTVLQSGS DMLDSESEAL SFFRIGWLNP DGKLPRGSLQ
SVAYVVIAGK LERWYYPYPE PEFGAQPLKT VLFDKVLSVE YAFFVGDKWE KRIEATTLPE
AIAMEVELEG IGKIQRKFLL PKGSMPKSDD DEGKDKGDDS SGDGTENGSG NSPGNGSGAG
KGNPDESEDD NGPRGREDI
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