| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0173 |
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| Symbol | |
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| ID | 4602429 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 203640 |
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| End bp | 204209 |
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| Gene Length | 570 bp |
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| Protein Length | 189 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639779484 |
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| Product | general secretion pathway protein H |
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| Protein accession | YP_926054 |
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| Protein GI | 119773314 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAGACAAC GCGGTTTTAC CCTGATAGAA GTCTTGCTGG TGGTGCTACT GATGGGCATC
GCCGCGGCTT CGATTACCCT GAGTTTGCCG GGCTCCGGGG TAAAACCTGT GCTGGATAAG
GCTGCGAGTC AATTTCTCGT GGCCACTGAT TTGATTCGGG ATGAGGCCGT GCTCAGCGGC
CAGTTTCTTG GGGTGGTTGT CGATGAGGAT AACTACCAGT ATGTGGTGTA TCACGAAGGC
AAGTGGCACA AGCTCGAGAA TGACAGGTTA CTGGCTGCCA AAGCCATGGA ACCCGGTATT
CGTATGAGCC TGGTGGTGGA AGGCTTACCG CTGGATCAGG AAGAGGAAGA CGAATCCTGG
TTTGATGAAC CTTTTATCGA TGAACCCACG GCCGAGCAAA AAGCCAAAAA CCCCGAGCCG
CAGATACTGG TATTCCCCAG CGGCGAGATG TCCGCCTTTG AATTGACCTT CCTTGGCAGA
GACGATGTGG GCCAGGAAGT CGACGTGCTG ATAAGCGGTG ATGCTCTGGG TCGACTCAAG
CTGGGGAGGG GTGACGATGA AACGCCTTAA
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| Protein sequence | MRQRGFTLIE VLLVVLLMGI AAASITLSLP GSGVKPVLDK AASQFLVATD LIRDEAVLSG
QFLGVVVDED NYQYVVYHEG KWHKLENDRL LAAKAMEPGI RMSLVVEGLP LDQEEEDESW
FDEPFIDEPT AEQKAKNPEP QILVFPSGEM SAFELTFLGR DDVGQEVDVL ISGDALGRLK
LGRGDDETP
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