| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0169 |
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| Symbol | |
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| ID | 4602425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 198247 |
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| End bp | 200358 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639779480 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_926050 |
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| Protein GI | 119773310 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000616881 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAATC AAGGATTCCG ACGCAAACTG ATCGCCAGCC TGGTCGCTGG TACAGTGCTC
CTTTCGCCTG CGATTGCCTG GTCTGCTTCC AACGAGCAGC TGGCGCCAAG TTTCAAAAAT
GCCGAAATTC AGGAATTTAT TAATACTGTT GGTAAACGAC TGAACAAGAC CATCATTGTC
GATCCGACCA TCCGCGGCAA AATCAACGTC AGAAGTTACG ATAACCTCAC CGAGGACCAA
TACTTCCAGT TTTTCCTGAA CGTGCTCCAG GTGTATGGCT ATGCTGTGGT GGAAATGGAA
AATGGCGTCC TTAAGGTCAT TAAAGACAAG GATGCCAAGA CCTCCAACAT CCGTGTAGCA
GATGACAGTG CCCCGGGCTT GGGAGATGAA TTGGTCACCC GCATCGTGCC CCTGTACAAC
TCCGAAGCCA AGCAGCTGGC ACCGCTTTTG CGTCAGCTTA ACGACAACGC CGGTGGCGGT
AACGTGGTTA ACTACGACCC GTCCAACGTA CTGATGCTCA CCGGCCGTGC TGCCGTGGTG
AACAAGTTGG TGGAAATCGT TAAACGTGTA GATAAACAGG GCGATACCGA AGTTCTGGTC
GTGCCTTTGC AGCACGCCTC CGCTTCTGAA ATGGTGCGGA TTATCGATAC CCTCTACCGC
GCTTCCGCCA ACCAGGCACA GCTGCCCGGT CAGGCCCCCA AGGTGGTGGC TGATGAGCGT
ATTAACGCCG TGGTGATCAG TGGCGATGAA AAGAGTCGCC AGCGTGTAGT GGAATTGGTG
AAACGTCTGG ACGCCGAGCA GGCCAGCACA GGCAACACCA AGGTGCGTTA CCTGCGTTAT
GCCAAGGCCG AAGATTTGGT TGAAGTGCTG ACCGGCTTTG CCCAAAAACT GGAAGAAAGC
AAAGACAACG GCGCACAGCA AGCTTCGGGC AAGCGTCGCA GCCAAATCAA TATCATGGCG
CACACAGACA CCAATGCTCT GGTCATCAGC GCCGAGCCTG ACCAGATGCG TACCCTAGAA
AGCGTCATCA ATCAGCTCGA TATCCGCCGT GCTCAGGTGC TGGTGGAAGC CATCATTGTG
GAAGTGGCAG AAGGTGACGA TGTGGGCTTT GGTGTGCAGT GGGCCACTGA GTCCGGTGGC
GGCACCCAAT TCAATAATCT GGGCCCTACC ATTGGTGAAA TTGGCGCCGG TATCTGGCAG
GCCCGGGGCG AAGAAGCCTC CGAAGTGACC ACCATTGACG GCAACGGTAA CCCAATCGTT
TCCAAGAACC CTGAAAAACG TGGTGATATC ACCTTGCTGG CACAGGCGCT GGGCAAGGTG
AATGGCATGG CGTGGGGTGT GGCCATGGGC GACTTTGGTG CCCTGATTCA GGCCGTGTCC
TCCGATACCA ACTCAAACGT GCTGGCTACG CCTTCCATCA CCACTCTGGA TAACCAGGAA
GCTGCCTTTA TCGTGGGTGA TGAGGTGCCG GTACTGACAG GGGCGCAAAA CTCCAGCAAC
GGTAACTCCA ACCCCTTCCA GACGGTTGAA CGTAAGGAAG TGGGTGTGAA GCTGAAAGTG
ACGCCACAAA TCAACGAAGG CAATGCAGTG AAGCTGGCCA TTGAGCAGGA AGTGTCTGGT
ATCAATGGCA AGACGGGCGT AGACGTGACC TTCGCTACCC GCCGTTTGAC CACCACAGTT
ATGGCTGACT CCGGCCAAAT CGTGGTGCTG GGTGGGTTGA TCAACGAAGA GGTGCAGGAG
AGCGTGCAGA AGGTGCCTAT CCTGGGCGAT ATTCCGCTGC TTGGCCATCT GTTCAAGTCG
TCTTCCAGCG GTAAGAAAAA GAAAAACCTG ATGGTGTTTA TCAAACCCAC CATCATTCGT
GATGGCATTA CCATGGAAGG CATCGCCGGT CGCAAATACA ACTATTTCCG TGCCCTGCAG
CTCGAGCAAC AGGAACGTGG CGTTAATCTG ATGCCCAATA CCAGTGTGCC CGTGCTTGAA
GAGTGGGATC AGTCGCAGCA TCTGCCACCG GAAGTGAATG ACATCCTTGA CCGCTACAAA
GAAGGCAAGG GGTTGGACAC CGACATGCGT GAAAAGGACG CCGCACTGAA TTACATCAAC
GAGAACAAGT AA
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| Protein sequence | MNNQGFRRKL IASLVAGTVL LSPAIAWSAS NEQLAPSFKN AEIQEFINTV GKRLNKTIIV
DPTIRGKINV RSYDNLTEDQ YFQFFLNVLQ VYGYAVVEME NGVLKVIKDK DAKTSNIRVA
DDSAPGLGDE LVTRIVPLYN SEAKQLAPLL RQLNDNAGGG NVVNYDPSNV LMLTGRAAVV
NKLVEIVKRV DKQGDTEVLV VPLQHASASE MVRIIDTLYR ASANQAQLPG QAPKVVADER
INAVVISGDE KSRQRVVELV KRLDAEQAST GNTKVRYLRY AKAEDLVEVL TGFAQKLEES
KDNGAQQASG KRRSQINIMA HTDTNALVIS AEPDQMRTLE SVINQLDIRR AQVLVEAIIV
EVAEGDDVGF GVQWATESGG GTQFNNLGPT IGEIGAGIWQ ARGEEASEVT TIDGNGNPIV
SKNPEKRGDI TLLAQALGKV NGMAWGVAMG DFGALIQAVS SDTNSNVLAT PSITTLDNQE
AAFIVGDEVP VLTGAQNSSN GNSNPFQTVE RKEVGVKLKV TPQINEGNAV KLAIEQEVSG
INGKTGVDVT FATRRLTTTV MADSGQIVVL GGLINEEVQE SVQKVPILGD IPLLGHLFKS
SSSGKKKKNL MVFIKPTIIR DGITMEGIAG RKYNYFRALQ LEQQERGVNL MPNTSVPVLE
EWDQSQHLPP EVNDILDRYK EGKGLDTDMR EKDAALNYIN ENK
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