| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0160 |
|---|
| Symbol | |
|---|
| ID | 4602417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 188547 |
|---|
| End bp | 190193 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639779472 |
|---|
| Product | glutamate synthase domain-containing protein |
|---|
| Protein accession | YP_926042 |
|---|
| Protein GI | 119773302 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0069] Glutamate synthase domain 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACTCA TGCAAAAGCT GTATTGGCTG ATGGCCACTG TGGGCAATGG CCTGGCAATC
TGGCTGTGTA GCCACCATCC CGGTCTGGGC TCGTGGCTGT TGCTGGCCTT TACCCTGGGC
TACACCCTGA TTGGCGCCTA CGATCTATTC CTTTCCCGCC ATAGCCTCAA CAGACTCTAT
CCCGTGGTGG CCTATATCCG GTATGGGCTT GAGTCGTTTC GGGTAGAGAT CCAGCAGTAT
TTCATTGCCA GCGACACCGA AGAAAAGCCC TTTAACCGCG AAGAGCGCTC TTTGGTGTAT
CAGCGTTCCA AGAGTGTGCG CGACACCATC GCCTTTGGTA CTCAGCGCGA TCTATTGGCT
GATAACTACT TGAGTTTGTG GCATTCACTA AGTCCTTGCG AGGTAAAAGA AGACAGCAAA
CGGGTGCGCT TTGGTGGCGA TGAATGTGTA AAGCCTTACA GTGCTTCACG GCTGAATATC
TCGGCCATGA GCTTTGGGTC TCTCTCGTCC AACGCCATTC AGGCGCTGAA TCTCGGGGCA
AAAAAAGGCG GTTTTTATCA TAACACCGGC GAGGGTGGGA TAAGCGATCA TCACCTCGAG
CATGGTGGCG ATCTGGTGTG GCAAATTGGC TCGGGCCTAT TTGGTTGCCG AACTCACGAG
GGGGCGTTCG ACCCTGAGGC ATTCCGCCGT CAGGCCTGCC TGCCCCAGGT GAAGATGATT
GAAATCAAGC TGTCTCAGGG GGCAAAGCCC GGTCATGGCG GGGTTCTGCC CAAGGCCAAG
ATTACTGAGG AAATTGCCCG TATCCGTCTT ATCCCCACCG ACAGGGACTG CGTATCGCCT
GCGGTGCATC CCATGTGTGC CACGCCCAAG GCGCTGCTCG GCTTTATCCG TGAGCTGCGG
ACATTATCCG GCGGTAAACC CGTTGGTTTT AAGCTGTGTA TTGGCAATCC GGCGGAGTTT
TTGGCCATCG GCAAGGCGAT GTTGGAAACC GGTATTTACC CTGACTTTAT TACGGTTGAT
GGCGCAGAAG GTGGCACGGG CGCCGCGCCG GTGGAGTTTA CCAATCGCAT GGGCATGGTA
TGTCTGGAGG GCGTTTACTT TGTTCACAAT GCCTTGATTG GATTGGGGCT CAGAGACAAG
GTGCGCATCA TTGCCTCAGG CAAAACCGCT TCGGCCTTTG ATTTGCTTTC AAAGCTTGCC
CTGGGCGCCG ATACCGTGAA TGCGGCCCGC ACCATGATGC TGGCGCTTGG ATGCATTCAG
TCCCGCCACT GCAACACCAA CAATTGCCCC ACGGGCATTG CCACCCAGGA TCCGGTGCGT
GGCAAGGCGG TGGACGTAGA GGTGAAAAGT GACCGGGTGA AAAATTTCCA CCACAACACC
CTGCATGCCT TTTATGAACT GCTGGGTGGC ATGGGGCTCG ACAGTCCCGC CAAGTTGTTG
CCGCAAATGA TAAAACGGCG TACCCCTTAT GGTTTGCCGA TGTCGGCCAG CAGTATGGTA
AAGCAGCTTT CCCACGGTGA GCTTGCCGAA GGCAGAGCCA CCGGCGTGTG GCAATCCTGG
TGGCAGGGTG CCAGCAGTGA CAGTTTCTTT GTTTATGACG ACCTTATCCT AACGCCAATC
GAGCTCAGGC AGGGGCATCC GGGATAG
|
|---|
| Protein sequence | MTLMQKLYWL MATVGNGLAI WLCSHHPGLG SWLLLAFTLG YTLIGAYDLF LSRHSLNRLY
PVVAYIRYGL ESFRVEIQQY FIASDTEEKP FNREERSLVY QRSKSVRDTI AFGTQRDLLA
DNYLSLWHSL SPCEVKEDSK RVRFGGDECV KPYSASRLNI SAMSFGSLSS NAIQALNLGA
KKGGFYHNTG EGGISDHHLE HGGDLVWQIG SGLFGCRTHE GAFDPEAFRR QACLPQVKMI
EIKLSQGAKP GHGGVLPKAK ITEEIARIRL IPTDRDCVSP AVHPMCATPK ALLGFIRELR
TLSGGKPVGF KLCIGNPAEF LAIGKAMLET GIYPDFITVD GAEGGTGAAP VEFTNRMGMV
CLEGVYFVHN ALIGLGLRDK VRIIASGKTA SAFDLLSKLA LGADTVNAAR TMMLALGCIQ
SRHCNTNNCP TGIATQDPVR GKAVDVEVKS DRVKNFHHNT LHAFYELLGG MGLDSPAKLL
PQMIKRRTPY GLPMSASSMV KQLSHGELAE GRATGVWQSW WQGASSDSFF VYDDLILTPI
ELRQGHPG
|
|---|
| |