| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0142 |
|---|
| Symbol | |
|---|
| ID | 4602399 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 161067 |
|---|
| End bp | 164276 |
|---|
| Gene Length | 3210 bp |
|---|
| Protein Length | 1069 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639779454 |
|---|
| Product | sensory box protein |
|---|
| Protein accession | YP_926024 |
|---|
| Protein GI | 119773284 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTCGC TGCACGACTA CAGCCTCAGA CAGAAGCTTA TCCTGTTTGC AGTTTTGCCT
ATTCTGACCC TGGCTATCTT TGGCATCATT CGCGCAATGG GGCTGCATCA AGAATTTCAA
ACCGCCAGTC GCAATACCCT CGCCATTCAA ATCAGCGGTG AAACCGCCGA ACTCGTGTAC
GCGTTGCAGC ACGAGCGCAA CCTGAGCATG AATTATCTCA GTGATAAACC CACCATCACG
GAAATAGACC TCGAGGCGCA GCAAGCCAAA ACCGACTTAA GCTATCGACA TTTGCTGCAA
AGCCACGCAC TCGCAAGATT CAGCCAGGAC CTGGCCAGTG ACGAGGCCAA GACCTTCAAC
GAGGTTCTGG GCAACATCAA GACCAGTGCC AATCGTCTGC CTCTGGTGCG TCAGGCGGTG
CAACAACATC AGTGGGATGA GCCGGGTTTC TTCAATCGTT TCAATGATGA ACTCCTGCTG
CTTATCAATC AGTTGCAGCA CCAAACCAAT GATGCCGCCC AGTCGCGGGC TTATTCCGAT
CTCTTGCTGA TTCTGAGAAT TCAGGAGCTG GCAGCGCGGG AACGGGGCTT GATGACGCGG
CTGCTGAGTG CCGATACCCT GGAGCCATCT ACATTTAACC AATTGGAAAC GTTGATAAAA
GAACAGACCC ATGGTGAAGA TCTGGCGTTG GATACTTTTG AAGAACACCA CAGGGTACTG
CTGCAAAAAC TGCAATCAGC GCTGCCGAGC CAACAGGTGG AAAACATCCG CGCCCAGGTG
GCACAGCAAC GTAACATAAG CCAGTTGGCC TGGGAGATGT CCGACAGCCT GGGTTACGGT
GGACTAATCC ACAGCTATAA AAATTTCCTG CTGCGGGGCG ATGAGGTCTA CGCCAGCCAA
TTTAACCAAA AATGGGATGA CATGAGCCTG TTGCTGGCCA AACTCAAGGC GCTGCCCAAT
CTCAGCGCGG AGCAGCGAGG TGCCATCGAC GAAATCAAAC ACACCTTGCT GCAGTACCAT
ATGGGCATTC CCAAAATCCG CCAGCTCAGA GCCGCCGGTT TGCCGGTTCA AACCATTGAT
GCCCAATTAC GGGTGGATGA CTCGCGGCTG CGAAGCGCCC TGGATACCCT GAGATCCCCG
GCCCCGCCGG TGAATGCCCG TCTTTGGTGG GAACTGGCCA ACGAACGCAC CGCCATGCTG
CAGGACATGG CGCGCAGCGT AGCAGCTCAT ATTGAAAGCC TGAGCCAATA TCAAATGCGG
ATGTCACTCA TCTATATCTG CACTTATGCC GCGTCGGCAC TGTTTACCCT GATACTCTCT
TTGCTGCTGG GGCGTAAAAT TACCGCCAGC TTTATGGGTA AAATCGAAAG CATTGCCTCG
GACATGCAAA AAATGGCCGA CGATCCCAAG CTGGAGCTGA CGATAAAAAC CAAGGGCAGT
GATGAGATTG CCGCCATGGC TGAGGCCATG AACAAGATGC TCAAGGAGCG TAAAAAGTAT
CGTCAGGCCC TGGTCAGGGC CGCCGCCGTG TTTGAATATT CCGCCGAAGG CATCATGGTG
ACCGATGCCG ATAACCACAT TGAGCTTATC AACCCCGCCT TCAGCCAGAT TACCGGCTAC
AGCATTGAAG AAGTGAAAGG CCGCAACCCC TCCATTCTCA GTTCGCACCG CAATCCACCG
CATCTCTACG ACGCCATGTG GGAATCGCTG CGCAGCACCG GTAAATGGGA GGGCGAAATC
TGGAACCGCC GCAAAGATGG CGAGGTCTAC CCCGAATATC TGGCCATTAC CTTGGTGCGT
GATGATGAGG GGCAGATAGT CCATCACATC GGTCTCTTTA TGGACATCAG CCGCCGCAAG
CAATACGAGC AGGACATCTG GTACAAGGCC AATTTCGATA CCCTCACAGA CCTGCCAAAC
CGCAAACTGC TGTCAGAACG ACTCGGCCAC GAGCTGAAAA TGGCGGAACA CGATGGTCGT
AAACTGGCGG TGATGGTGCT GGATCTCGAC AGATTCAAAT ATATCAATGA TACCCAGGGC
CACGACTGCG GTGACCTGCT GCTAAAAGCC GTCGCCAAGC GCCTGCAAAC AGTCATGGGC
TCCACCGACT TTATTGCCCG CCTCGGTGGC GATGAATTTG TGATAGTACT GCCCCGCCTG
GCGCAGGAAC ATGCAGTAGA GCAATATGCC AAACGGTTGC TGCAATCCAT GGGTGACCCC
TTCAAAGTCG AGCAGGGTTC GATGTCTGTA TCGGCCAGCC TGGGGATAGG CCTGTATCCC
CAGGATGGGC TGGATGTGGA AACCCTGCTC AGTAATGCCG AAACCGCCAT GTATGGCGCC
AAGGACGAAG GGCGTAATCA CTTTAAATAC TTCACCCAGG AAATGAATCT GGCACTGATT
GAACGCCTGG GTATGGAGCG TGACTTGCGC CGGGCCGTGG CCAACGACGA GTTTTGCTTG
TTCTACCAAC CCGTGGTGGA CATGGAAAGC GGCGAGGTCA CTTCACTGGA GGCCTTGCTG
CGCTGGCAGG ATCCCGAGCA GGGCCTGGTC TCACCGGTTC GCTTTATTCC GGTGGCGGAA
GACATGGGAT TGATGGGTGA ACTGGGCCAG TGGGTGATGG ACAAAGCACT GGCCGATTTG
GCCCGTCTCC ACACTCTGGG GTTTGGTTTG AGCATGGCCA TCAACGTGTC GGCGTGCCAA
TGTCACTGCA AACGCCAGAG TCTGGACGAG CAACTCAGAA GTGCGCTGTC CCGTCATGGC
ATTGCGCCCC GCCATCTGCA TGTGGAAATT ACCGAGAGCT TGCTGTTGGA CAACAGTCAT
CACTGCCTGG ACACCCTGAA CAATATTCGT GACCTGGGCT GTGCCATCTA TCTGGACGAT
TTCGGTACCG GTTACTCGTC CCTCAGCTAC CTGAAAAAAT TCCCGATTTC GGCCATCAAA
ATCGATAAAA GCTTTGTGGA GCAACTGCCG GGCTGCGAGT CGGATGCCAG CCTGGTGCGC
GCCATCGTCA ACATGAGTAA GTCATTGGGT ATGAAGCTGG TGGCAGAAGG AATCGAATCC
AAAGACCAAC AGGCCTTTTT GCAGGCGCTG GGCAGTCAGT TCGGTCAGGG CTACCTCTAC
TCACGTCCTC TGCCCTTTGA GGAATTGCTG CCGTGGCTTG AACGCCACCA GCACAGCCAG
CCGGATGGAT TTGCCTATCA AAACAGTTAA
|
|---|
| Protein sequence | MASLHDYSLR QKLILFAVLP ILTLAIFGII RAMGLHQEFQ TASRNTLAIQ ISGETAELVY
ALQHERNLSM NYLSDKPTIT EIDLEAQQAK TDLSYRHLLQ SHALARFSQD LASDEAKTFN
EVLGNIKTSA NRLPLVRQAV QQHQWDEPGF FNRFNDELLL LINQLQHQTN DAAQSRAYSD
LLLILRIQEL AARERGLMTR LLSADTLEPS TFNQLETLIK EQTHGEDLAL DTFEEHHRVL
LQKLQSALPS QQVENIRAQV AQQRNISQLA WEMSDSLGYG GLIHSYKNFL LRGDEVYASQ
FNQKWDDMSL LLAKLKALPN LSAEQRGAID EIKHTLLQYH MGIPKIRQLR AAGLPVQTID
AQLRVDDSRL RSALDTLRSP APPVNARLWW ELANERTAML QDMARSVAAH IESLSQYQMR
MSLIYICTYA ASALFTLILS LLLGRKITAS FMGKIESIAS DMQKMADDPK LELTIKTKGS
DEIAAMAEAM NKMLKERKKY RQALVRAAAV FEYSAEGIMV TDADNHIELI NPAFSQITGY
SIEEVKGRNP SILSSHRNPP HLYDAMWESL RSTGKWEGEI WNRRKDGEVY PEYLAITLVR
DDEGQIVHHI GLFMDISRRK QYEQDIWYKA NFDTLTDLPN RKLLSERLGH ELKMAEHDGR
KLAVMVLDLD RFKYINDTQG HDCGDLLLKA VAKRLQTVMG STDFIARLGG DEFVIVLPRL
AQEHAVEQYA KRLLQSMGDP FKVEQGSMSV SASLGIGLYP QDGLDVETLL SNAETAMYGA
KDEGRNHFKY FTQEMNLALI ERLGMERDLR RAVANDEFCL FYQPVVDMES GEVTSLEALL
RWQDPEQGLV SPVRFIPVAE DMGLMGELGQ WVMDKALADL ARLHTLGFGL SMAINVSACQ
CHCKRQSLDE QLRSALSRHG IAPRHLHVEI TESLLLDNSH HCLDTLNNIR DLGCAIYLDD
FGTGYSSLSY LKKFPISAIK IDKSFVEQLP GCESDASLVR AIVNMSKSLG MKLVAEGIES
KDQQAFLQAL GSQFGQGYLY SRPLPFEELL PWLERHQHSQ PDGFAYQNS
|
|---|
| |