| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0131 |
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| Symbol | |
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| ID | 4602388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 146791 |
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| End bp | 148878 |
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| Gene Length | 2088 bp |
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| Protein Length | 695 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639779443 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_926013 |
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| Protein GI | 119773273 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACTCA AACCACCCGC TTTCGCACTA TCGCTCTTGT CTCTTTCCCT GCTTCCCTTG
CTGGGGCATG CCAGCGAGAC CCGTGATCCT CTGCTCAATA TTGCCGATGT GATTGTGGTC
CGCGGTGAAA AGCCCACCGC CGAAGCGCTG GCAACCACCC ATTGGCGTAT TGATGCCGAG
GATATTCGCA ACAGCGGTGC CCAAACGCTG GATCAGGTGC TGGCTACGGT GCCCGGCATC
CATGTGCGTA CCGGTGGGGA GGGTACGCCC CGAATTGATA TCCGTGGTCT TAAAACCCGT
CACGTTACCC TGCTGATTAA CGGGGTGCCG GCCGCCAGTG CCGCAGATGG CCAGTTCGAT
CCCAGTGTGA TCCCAACCAG CCAGATTGCC GCTGTCGATA TCGCCGTGGG TCCTGCGTCC
GTGCTCTATG GCCCGGGTGG TGCAGGTGGC GTAATCAACG TGATTACCCG CAGTGGTGAC
GAGGCTTCGG TATCCGGGAA GCTTGAGTTT GCCGGTTCGG ATACCCTCAA CGCTGACGTG
GCATTGGGTG GCGGTGGCGA CAACTGGCAG GGCTTTGTCA GCGCGGGTAA GCAAAAGCGC
GAAAGCTGGC CGTTGTCGGA TGATTACCAG GAAGCGCCCA ATCAACCCGC AGGTGATCGC
CTCAACGCCG ACAGGGAAGT AGACAATTTT TATGGCCAGG GCAGCTACTG GCTGTCAGAT
GCCACTCAAC TGACTGCCAA CATTAATTTG CGCGAGGGCG ACTGGGGTAA GCCGGGCCGT
GACGGCAGCG GCTCAGGACG TGCCAAGTTT GAACGTGTGG ATGACTACCG GAATATCAGC
AGTCAATTGG GCCTGGCCCA TCGCTTTGGC AACGGCATGA CGCTCAGGGG CTATGGCTAC
TACAACCGTA CCGAAACCCT GGAGTCTGCC TACACCGACA TCAGTTTCAG TGACCTCGAC
AGCCAGCAGC GCGGCGAGTC CACGGTGCAG GGGCTGAATC TACAACTTGT CACAGAGCTT
GGCCGTCACA GTCTCCTTAC TCTGGGTGCT GGTGCCGAAG AACAGCGCTG GGATGAGCTG
GCGACTCAAT ATTCGACCTC TGACTCAGGC TCGGGCAGTG GTTCAGGCGG TGGTTCAGGC
GGTGGCTCTG GCAGTGGTAC AGGCGGTGGT TCAGGCGGTG GCTCGGGCGG TGGTTCGGGC
AGTGGCTCGG GCGGAGGTTC AGGCAGTGGC TCCGGCGGCG GCTCCAGCAG CGGTGTACCC
ACAGAGACAG GCTTTGACGA CAGTGCCTGG GTGTACAGTC TTGCGGCCGA GTATCAATAT
CAACGGGATA ACTGGGGTGC AACCCTTGGC GGTGCCTGGT ATCAGCGTGA TGGCGATACC
TCGGTGGATG AGCCTTCGGC CATGGCCGCA CTGTACTGGC AGGCGCTGTC TCAGACACGT
CTGAGCGCTT CGGCGGCCCG CAAGGTGCGC TTCCCCTCCA TGGAAAACCT GTATTCACTT
TCTGCAGGCA ATGGCGAACT GACCGCTGAG ACTTCAGAGC ATTGGGAGTT AGGTCTGGAG
CAGGGCTTCG CCCTCGGCAG TTTCGAGGTT TATGGTTACG AGACCGGCGC CGATGATTAC
ATCGCCAAGG GCACAGATGG TATCTACGCC AATCTGGGTG ACTATCGATT CCGCGGTGTG
GATGCGCGGC TGTTGATATC ACCTTTGCAA GCGCTGGATG TCTCTCTGAG CTACAGCTTC
CTCGACAGTG AAGATAAAAC ACCGGACAGC ACCGAAGCGC TGCAATATCG CCCGCGCCAT
CAGTACGGCC TGACCCTGGA TTATCGCTTC GACACCGATA CCCGGGTGCA CCTGTCCTGG
CAGAAGGTGA TGGATCAGAT TTACTTTGAG CGCAGCGGCA AAACCATGGT CGAGCGTAAC
CTGCCGGACT ACGACCTGCT TGACCTCAAG CTGTCGCAGT CGTTTTACGA TGACAAGCTG
GCGCTCTACA TCAGGGCCAC TAACCTGCTG GACGAAAACT ACGCCGAGAG CGAGTCTCTG
CCCCAGGCGG GTCGCCAGTG GTTTATCGGT ATGGATTGGC GCTTGTGA
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| Protein sequence | MTLKPPAFAL SLLSLSLLPL LGHASETRDP LLNIADVIVV RGEKPTAEAL ATTHWRIDAE
DIRNSGAQTL DQVLATVPGI HVRTGGEGTP RIDIRGLKTR HVTLLINGVP AASAADGQFD
PSVIPTSQIA AVDIAVGPAS VLYGPGGAGG VINVITRSGD EASVSGKLEF AGSDTLNADV
ALGGGGDNWQ GFVSAGKQKR ESWPLSDDYQ EAPNQPAGDR LNADREVDNF YGQGSYWLSD
ATQLTANINL REGDWGKPGR DGSGSGRAKF ERVDDYRNIS SQLGLAHRFG NGMTLRGYGY
YNRTETLESA YTDISFSDLD SQQRGESTVQ GLNLQLVTEL GRHSLLTLGA GAEEQRWDEL
ATQYSTSDSG SGSGSGGGSG GGSGSGTGGG SGGGSGGGSG SGSGGGSGSG SGGGSSSGVP
TETGFDDSAW VYSLAAEYQY QRDNWGATLG GAWYQRDGDT SVDEPSAMAA LYWQALSQTR
LSASAARKVR FPSMENLYSL SAGNGELTAE TSEHWELGLE QGFALGSFEV YGYETGADDY
IAKGTDGIYA NLGDYRFRGV DARLLISPLQ ALDVSLSYSF LDSEDKTPDS TEALQYRPRH
QYGLTLDYRF DTDTRVHLSW QKVMDQIYFE RSGKTMVERN LPDYDLLDLK LSQSFYDDKL
ALYIRATNLL DENYAESESL PQAGRQWFIG MDWRL
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