| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0130 |
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| Symbol | |
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| ID | 4602387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 145079 |
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| End bp | 146437 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639779442 |
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| Product | menaquinone-specific isochorismate synthase, putative |
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| Protein accession | YP_926012 |
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| Protein GI | 119773272 |
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| COG category | [H] Coenzyme transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1169] Isochorismate synthase |
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| TIGRFAM ID | [TIGR00543] isochorismate synthases |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.331361 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCAGTCA TGTCCCTGCC CGATGCCTTG CTGTCACTCG AGGCAAAGAT TCAACATCTC
AGTACAACCC AGGGCAGTGA GCCCTTGGTG CAGCTGACAG AGGCAGTCCC TGCCTTGCCC
TTGATATCCT GGCTGGCTTC TCAGGAGCTG TATCCCAGGA TCTATTGGCA TGGCCGTGAT
AAAGAAGAAG AGGTGGCTGC CATCGGCTGC ACCTGTGATT TTTTCTTCGA TGACCAAGTG
GCTGATCAGC AGTTGGCGGA GGTTTATCAA CGTCAGCGCG CTTTGAGCTA TAACCAAAAT
TTCCGTTATT ACGGTGGTGT AGCCTTTGAC CGTGAGGTAG AAGGCTGGCC GGAGTTTGGC
CGTGCCCGTT TTGTACTGCC CCGTATTGAG CTGCGCCGCA GCGGCAAGGA ATTCAAACTG
CTGCTTAACC TGAATTTTGA TGGCAACGAC AGGCATGCAG AGTGTCAGGC CGCACTGCAG
GCGCTGAGTT CGCTAAAGCG TCCCAAGCCC CTGACACCAC CCGGTAAGGT AAATCTACTG
GGGCGCAGTG AATATCCCGA ATATCCCCGC TGGCAACAGT TGGTGGAGCA GGTGACGGCG
GATAAATTTA ACCGGCACAC TCCCAAGGTG GTGCTCTCCC GGTTGTCACA ACTGGAAATC
AATGACCCGG TCGATCCCTG GATGGTACTG GCCTGCTGGC AGGGCCGCTG TCCAAGCAGC
TTCCAGTTTG GATTTCAGTT TTCCAAAGAC AGAACCTTTA TTTCCTGCTC GCCCGAGCGG
TTGTATCTAA GGCGGGGACA AGAGCTCTTC ACCGAGGCGC TGGCGGGCAC CACGCTGCGC
GGCCATACCG AGGAAGAAGA TGCTCTGCTT GCAAAACAAT TACAGGAAGA CAGTAAAAAC
AGTCACGAGA ATCAGCTGGT TCGCCAGCAC ATAGTCGAGC ACCTGTCCCC TCTGAGCCAC
TATGTGGGTG CCGAAGAGTC GCCACGGATC TTTAAGCTGC CCCATATCCA GCATTTGCAC
CGTGCCATTC GTGCCGAGCT GAAGCCCGGC ATCAATGATT TTCAGCTATT GCTGGCTTTG
CATCCCACTC CAGCCGTTGG CGGTCTGCCA AGGCCCAGCG CCTTGAGCTT CATTCGCCAA
CAGGAAGGAT ATAACCGGGG GTGGTACGCA GGTGCATGCG GTTACCTGAA TCGCCATGAG
AGTGAGTTCT CCGTGGCCAT TCGCAGTGCG CTGATTGAGC CGGGACGAAT TAACCTGTTT
GCCGGTGCCG GCATAGTGGC AGGTTCAGAC CCCGAAGCAG AATGGCAGGA GCTGGACAAT
AAGCTCGCCA CCATCTTATC GATTCTGGTG GAGCTCTGA
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| Protein sequence | MSVMSLPDAL LSLEAKIQHL STTQGSEPLV QLTEAVPALP LISWLASQEL YPRIYWHGRD
KEEEVAAIGC TCDFFFDDQV ADQQLAEVYQ RQRALSYNQN FRYYGGVAFD REVEGWPEFG
RARFVLPRIE LRRSGKEFKL LLNLNFDGND RHAECQAALQ ALSSLKRPKP LTPPGKVNLL
GRSEYPEYPR WQQLVEQVTA DKFNRHTPKV VLSRLSQLEI NDPVDPWMVL ACWQGRCPSS
FQFGFQFSKD RTFISCSPER LYLRRGQELF TEALAGTTLR GHTEEEDALL AKQLQEDSKN
SHENQLVRQH IVEHLSPLSH YVGAEESPRI FKLPHIQHLH RAIRAELKPG INDFQLLLAL
HPTPAVGGLP RPSALSFIRQ QEGYNRGWYA GACGYLNRHE SEFSVAIRSA LIEPGRINLF
AGAGIVAGSD PEAEWQELDN KLATILSILV EL
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