| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0126 |
|---|
| Symbol | |
|---|
| ID | 4602383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 139832 |
|---|
| End bp | 141958 |
|---|
| Gene Length | 2127 bp |
|---|
| Protein Length | 708 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639779438 |
|---|
| Product | sensor histidine kinase |
|---|
| Protein accession | YP_926008 |
|---|
| Protein GI | 119773268 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000118135 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.929624 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTTCT TCACCCAATT GTTTGGTGTT AACTGGCGCC AGATGCAGGC CAAGGTGCGC
TACCGCATTC TTATTCTTAC CTTGCTGCCA ATTTTACTGA CCCTGGTGAG CCTGGTATTT
ATCACCATCT ACTGGAATAT CAGCTACACC GGCCAGCAGT TGTTTATGAA GGTAAAAGCC
GACCTCACTG TGGCCAACAA CACCCTCGAA CAGGTGCAGC GGCGGCAGGA AAAGGAGCTG
GAGAACCTGC TCCGGTCGTG GGAGTTTCAA AACTTTTTCC GCGCTAACCA CGGCGACAAA
CAGCAGCAGG CGGACGACTT CAACGCGTTT CTGGCCGAGC GCCGTATTGC CATGGATTTG
GACTTTTTAC GGCTGATTAA TGTTGAGCGT GCCGCGGCCG ATCCTGACTT GCGTCATCTG
CTGACCAAAG TAAAGGGTGG AGAGCCATTT ACCGGCCTGA TGGTGCTCTC ATCAAAACGC
CTTGCCCGTC TGGATCCGGT ATTGGCCGAG CGTGCCCGGT TGACACTCTT GCCCACTCCC
CGCGCCGATG TGCCGGACAG GGACGCTGAA GACAGGGGCA TGCTGAGCCG AAGTCTGATG
CCGATAGTGG ATAGCGAGGG CGAGGTAGCC TGGTATCTGG ATGGCGGCAC CCTGCTGAAT
CGGGATACCC GTATTGTCGA TCACATCCGT GACCTGGTGT ACGACAAGGG TACACTGCCT
GAGCGCTCCA TCGGCACTGT CACCATCTTT TTGGACAATG TGCGTATCAG CACCAACGTG
CCGCTGCACT TCTTCCCCCG GGATGGCGAA GACAAGGGGC GGGCGCTGGG CAGCCTGGTA
TCTGAAGAGG TTAAACACAA GGTGCTGACA CAGGGCCAGA CCTGGGTCGA CAGAGCGTTT
GTGTACAACG ACTGGTTTAT CTCTGCCTAC GCGCCTCTAA CCGACGTGCG TGGTGAGCGT
ATCGGCATGA TATACACAGG CTTTTCTGAA GCGCCCTTTA TCCATAACTA TCTGCTTAAC
ATCATAGAGC TGGGCACCAT ACTCATGCTG GTGCTGCTGG TGTCCGGCAT GCTGGTGTAT
CGGGGCGCTT ACAGCCTGCT GCAGCCAATT GAACGGATCC ATCATGTGGT AAAGGCGGTG
CAGTCGGGCC GTAACGTACG CATCGGTGAA TTGGGACTGG AGAAAGACAA CGAGCTTGCC
AATCTGGCTG AGCAGTTTGA CCGCATGCTC GACCTGCTGC AAAGGCGCAA TGCCCAGATC
CAGTCCGCCG CCGAGCAGCT GGAATTAAAA GTGGAAGAGC GAACCCGCAG TCTGCAGGAA
AAAACGGAAG AGCTGCAGCG TAACGTGTCG TTGCTGAACG AGACCCGAGC TCAGCTGGTG
ACCAATGAAA AGCTCACAGC ATTGGGTGAG CTTACAGCGG GTATTGCCCA CGAAATTAAT
AATCCTACGG CGGTGATCCT CGGCAATATG GAGCTGCTGC GCTCTGAGCT TGGTGATAAG
GCAGGACAGG TGGAGGAGGA AATCGACCTG GTTATCCAAC AAGTCGGCCG CATAAGCACC
ATTATTCGCA GCCTGCTGCA GTACAGCCGC CCCGGCGAAT TTAACGCACC GCTTGAGATG
CACCAGATAA CCCCCATCAT CGAAGAAATG CTGGTATTGG TGCGCCACTC CATCAAGAAG
CAGGAAGTGG TTCTTCATCA GGAGCTTAAT GCCAGTTGTC CGGTACAAAT CAACCGACCG
CAATTATTGC AGGTCTTGAT TAACCTGGTG GTTAACGCGG CCCATGCAAT GGATGGGAAG
GGGCGGATTT GGATCCGTAC CTACGACTGG GTGGTGCAGG ATGAGCCGGT TGGGGTCAAG
ATTGAAATCG AAGACGAGGG TTGTGGTATC GCTCCCGAGC AGCTTGGCCG TATCTTTGAC
CCTTTTTACA CCACGCGTCC GGATGGCACG GGTTTGGGAT TGTCTTTGAG CTACGGCATC
ATCAAACGGA TTGGCGGCAC CATAGAAGTC ACTTCCACCC TGGGCAAAGG CACCCTGTTT
ACCATTGGTC TGTACCATGA AGCACGGGAA GAGAGTGGCT TGAATCCCTA CGAAGGTTTG
ATGCTGGGCG CCGGAGGTTT GGCTTAA
|
|---|
| Protein sequence | MSFFTQLFGV NWRQMQAKVR YRILILTLLP ILLTLVSLVF ITIYWNISYT GQQLFMKVKA
DLTVANNTLE QVQRRQEKEL ENLLRSWEFQ NFFRANHGDK QQQADDFNAF LAERRIAMDL
DFLRLINVER AAADPDLRHL LTKVKGGEPF TGLMVLSSKR LARLDPVLAE RARLTLLPTP
RADVPDRDAE DRGMLSRSLM PIVDSEGEVA WYLDGGTLLN RDTRIVDHIR DLVYDKGTLP
ERSIGTVTIF LDNVRISTNV PLHFFPRDGE DKGRALGSLV SEEVKHKVLT QGQTWVDRAF
VYNDWFISAY APLTDVRGER IGMIYTGFSE APFIHNYLLN IIELGTILML VLLVSGMLVY
RGAYSLLQPI ERIHHVVKAV QSGRNVRIGE LGLEKDNELA NLAEQFDRML DLLQRRNAQI
QSAAEQLELK VEERTRSLQE KTEELQRNVS LLNETRAQLV TNEKLTALGE LTAGIAHEIN
NPTAVILGNM ELLRSELGDK AGQVEEEIDL VIQQVGRIST IIRSLLQYSR PGEFNAPLEM
HQITPIIEEM LVLVRHSIKK QEVVLHQELN ASCPVQINRP QLLQVLINLV VNAAHAMDGK
GRIWIRTYDW VVQDEPVGVK IEIEDEGCGI APEQLGRIFD PFYTTRPDGT GLGLSLSYGI
IKRIGGTIEV TSTLGKGTLF TIGLYHEARE ESGLNPYEGL MLGAGGLA
|
|---|
| |