Gene Sama_0126 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0126 
Symbol 
ID4602383 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp139832 
End bp141958 
Gene Length2127 bp 
Protein Length708 aa 
Translation table11 
GC content55% 
IMG OID639779438 
Productsensor histidine kinase 
Protein accessionYP_926008 
Protein GI119773268 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000118135 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.929624 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCTTCT TCACCCAATT GTTTGGTGTT AACTGGCGCC AGATGCAGGC CAAGGTGCGC 
TACCGCATTC TTATTCTTAC CTTGCTGCCA ATTTTACTGA CCCTGGTGAG CCTGGTATTT
ATCACCATCT ACTGGAATAT CAGCTACACC GGCCAGCAGT TGTTTATGAA GGTAAAAGCC
GACCTCACTG TGGCCAACAA CACCCTCGAA CAGGTGCAGC GGCGGCAGGA AAAGGAGCTG
GAGAACCTGC TCCGGTCGTG GGAGTTTCAA AACTTTTTCC GCGCTAACCA CGGCGACAAA
CAGCAGCAGG CGGACGACTT CAACGCGTTT CTGGCCGAGC GCCGTATTGC CATGGATTTG
GACTTTTTAC GGCTGATTAA TGTTGAGCGT GCCGCGGCCG ATCCTGACTT GCGTCATCTG
CTGACCAAAG TAAAGGGTGG AGAGCCATTT ACCGGCCTGA TGGTGCTCTC ATCAAAACGC
CTTGCCCGTC TGGATCCGGT ATTGGCCGAG CGTGCCCGGT TGACACTCTT GCCCACTCCC
CGCGCCGATG TGCCGGACAG GGACGCTGAA GACAGGGGCA TGCTGAGCCG AAGTCTGATG
CCGATAGTGG ATAGCGAGGG CGAGGTAGCC TGGTATCTGG ATGGCGGCAC CCTGCTGAAT
CGGGATACCC GTATTGTCGA TCACATCCGT GACCTGGTGT ACGACAAGGG TACACTGCCT
GAGCGCTCCA TCGGCACTGT CACCATCTTT TTGGACAATG TGCGTATCAG CACCAACGTG
CCGCTGCACT TCTTCCCCCG GGATGGCGAA GACAAGGGGC GGGCGCTGGG CAGCCTGGTA
TCTGAAGAGG TTAAACACAA GGTGCTGACA CAGGGCCAGA CCTGGGTCGA CAGAGCGTTT
GTGTACAACG ACTGGTTTAT CTCTGCCTAC GCGCCTCTAA CCGACGTGCG TGGTGAGCGT
ATCGGCATGA TATACACAGG CTTTTCTGAA GCGCCCTTTA TCCATAACTA TCTGCTTAAC
ATCATAGAGC TGGGCACCAT ACTCATGCTG GTGCTGCTGG TGTCCGGCAT GCTGGTGTAT
CGGGGCGCTT ACAGCCTGCT GCAGCCAATT GAACGGATCC ATCATGTGGT AAAGGCGGTG
CAGTCGGGCC GTAACGTACG CATCGGTGAA TTGGGACTGG AGAAAGACAA CGAGCTTGCC
AATCTGGCTG AGCAGTTTGA CCGCATGCTC GACCTGCTGC AAAGGCGCAA TGCCCAGATC
CAGTCCGCCG CCGAGCAGCT GGAATTAAAA GTGGAAGAGC GAACCCGCAG TCTGCAGGAA
AAAACGGAAG AGCTGCAGCG TAACGTGTCG TTGCTGAACG AGACCCGAGC TCAGCTGGTG
ACCAATGAAA AGCTCACAGC ATTGGGTGAG CTTACAGCGG GTATTGCCCA CGAAATTAAT
AATCCTACGG CGGTGATCCT CGGCAATATG GAGCTGCTGC GCTCTGAGCT TGGTGATAAG
GCAGGACAGG TGGAGGAGGA AATCGACCTG GTTATCCAAC AAGTCGGCCG CATAAGCACC
ATTATTCGCA GCCTGCTGCA GTACAGCCGC CCCGGCGAAT TTAACGCACC GCTTGAGATG
CACCAGATAA CCCCCATCAT CGAAGAAATG CTGGTATTGG TGCGCCACTC CATCAAGAAG
CAGGAAGTGG TTCTTCATCA GGAGCTTAAT GCCAGTTGTC CGGTACAAAT CAACCGACCG
CAATTATTGC AGGTCTTGAT TAACCTGGTG GTTAACGCGG CCCATGCAAT GGATGGGAAG
GGGCGGATTT GGATCCGTAC CTACGACTGG GTGGTGCAGG ATGAGCCGGT TGGGGTCAAG
ATTGAAATCG AAGACGAGGG TTGTGGTATC GCTCCCGAGC AGCTTGGCCG TATCTTTGAC
CCTTTTTACA CCACGCGTCC GGATGGCACG GGTTTGGGAT TGTCTTTGAG CTACGGCATC
ATCAAACGGA TTGGCGGCAC CATAGAAGTC ACTTCCACCC TGGGCAAAGG CACCCTGTTT
ACCATTGGTC TGTACCATGA AGCACGGGAA GAGAGTGGCT TGAATCCCTA CGAAGGTTTG
ATGCTGGGCG CCGGAGGTTT GGCTTAA
 
Protein sequence
MSFFTQLFGV NWRQMQAKVR YRILILTLLP ILLTLVSLVF ITIYWNISYT GQQLFMKVKA 
DLTVANNTLE QVQRRQEKEL ENLLRSWEFQ NFFRANHGDK QQQADDFNAF LAERRIAMDL
DFLRLINVER AAADPDLRHL LTKVKGGEPF TGLMVLSSKR LARLDPVLAE RARLTLLPTP
RADVPDRDAE DRGMLSRSLM PIVDSEGEVA WYLDGGTLLN RDTRIVDHIR DLVYDKGTLP
ERSIGTVTIF LDNVRISTNV PLHFFPRDGE DKGRALGSLV SEEVKHKVLT QGQTWVDRAF
VYNDWFISAY APLTDVRGER IGMIYTGFSE APFIHNYLLN IIELGTILML VLLVSGMLVY
RGAYSLLQPI ERIHHVVKAV QSGRNVRIGE LGLEKDNELA NLAEQFDRML DLLQRRNAQI
QSAAEQLELK VEERTRSLQE KTEELQRNVS LLNETRAQLV TNEKLTALGE LTAGIAHEIN
NPTAVILGNM ELLRSELGDK AGQVEEEIDL VIQQVGRIST IIRSLLQYSR PGEFNAPLEM
HQITPIIEEM LVLVRHSIKK QEVVLHQELN ASCPVQINRP QLLQVLINLV VNAAHAMDGK
GRIWIRTYDW VVQDEPVGVK IEIEDEGCGI APEQLGRIFD PFYTTRPDGT GLGLSLSYGI
IKRIGGTIEV TSTLGKGTLF TIGLYHEARE ESGLNPYEGL MLGAGGLA