| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0117 |
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| Symbol | |
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| ID | 4602374 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 131236 |
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| End bp | 132051 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639779429 |
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| Product | formamidopyrimidine-DNA glycosylase |
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| Protein accession | YP_925999 |
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| Protein GI | 119773259 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
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| TIGRFAM ID | [TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.481524 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGAAT TACCGGAAGT TGAAGTGACC CGCCAGGGCA TTGCGCCCCA CCTGGAAGGC
AACCGCGTTG AAGCCCTGAT TGTGCGTAAT GCCAACCTGC GCTGGCCAGT GCCAGAACTA
GCACAAAACA TTGTTGGCCA AACCATTTTG GGTGTCAGAC GCCGGGCCAA GTATTTGCTG
ATAGATACAC AGGCGGGCAC CACTATTGTG CATTTGGGCA TGTCCGGCAG CCTGAGGGTG
CTGCCAAAAA ATACCCCTGT CGAGAAACAT GATCACATTG ATCTGGTGAT GCAAAATGGC
CGGGTATTGC GTTTTAACGA TCCCCGCCGC TTCGGCGCTT GGCTCTGGAG TGAACTGCCG
GAAGCGGCCC ACCCGCTGCT GGAAAAGCTG GGACCTGAGC CGCTATCGGC CGCTTTCCAT
GCCGATTACC TGCAAGCCGC ACTCAAAGGT AAGAAGAAAG CCATCAAGCT GTGCCTGATG
GACAACGCCA TCGTGGTGGG CGTGGGGAAT ATCTACGCCA ATGAAGCCTT GTTTGCCGCC
GGTATTCACC CTGAGGCAGA GGCGGGCAAA GTCGATGCCG AGCGCCTTAC CCTGCTCACT
GCTGAAGTTA AGACGATACT GACGCAGGCT ATAAAACAAG GCGGCACCAC TCTCAAGGAC
TTTACCAATG CCGACGGCAA GCCCGGTTAC TTTGCTCAAA AATTACATGT GTATGGCCGC
GGCGGCGAGA CCTGCACCGA GTGCGGCCAC CTGCTGAGTG AAATTCGCCT GGGTCAGCGC
ACTACGGTAT TTTGCAGCCT CTGCCAGACA AAATAA
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| Protein sequence | MPELPEVEVT RQGIAPHLEG NRVEALIVRN ANLRWPVPEL AQNIVGQTIL GVRRRAKYLL
IDTQAGTTIV HLGMSGSLRV LPKNTPVEKH DHIDLVMQNG RVLRFNDPRR FGAWLWSELP
EAAHPLLEKL GPEPLSAAFH ADYLQAALKG KKKAIKLCLM DNAIVVGVGN IYANEALFAA
GIHPEAEAGK VDAERLTLLT AEVKTILTQA IKQGGTTLKD FTNADGKPGY FAQKLHVYGR
GGETCTECGH LLSEIRLGQR TTVFCSLCQT K
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