| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0101 |
|---|
| Symbol | |
|---|
| ID | 4602358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 114298 |
|---|
| End bp | 115050 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639779413 |
|---|
| Product | 3-deoxy-D-manno-octulosonic-acid kinase |
|---|
| Protein accession | YP_925983 |
|---|
| Protein GI | 119773243 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3642] Mn2+-dependent serine/threonine protein kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000139094 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCAG GTTCCACGCT TTGGACAAGA ATTCCCGCGA TGCAGCAACA AAACCATCCG
CCCTACACCC TGGCCATTGC CCAGGGCGAG TCCATCTCAC TGGACCCGTC CCATTTCACC
CCTGAACATT GGCAGGCTCT CGCCGCCGTG ACTGGCACCT CGAAAGGGCG TTATACCACC
TGGTTTGTGC GCCACCCCGA GGCTAATCAA GACTGGGTGC TGCGCCACTA CTGGCGCGGA
GGGTTGATGG AAAAGTTCAG TAAAGATAGA TATCTGTATA CAGGTATGGC GAATACCCGC
GCCATCGCAG AGCTGGCTTT GCTTGAAAAG CTCCATGCAG AGGGCTTTCC CGTGCCCCGC
CCCGTGGGTG CCAGGGTACG TCGATATGCA CTCTGGTACA GCGCCGATAT TCTGATTGAG
CGGATGCCCG GATGTCGCGA CCTGCTGGCC TGGCTGGAAC AAGGTCCATT GGATGAGGCA
GAGTGGAAAG CCCTAGGCGT TTGCATCGCC CGCTTCCATC ACCGCGGCGT CTACCACGCC
GATCTTAACG CCAAGAACAT CCTCAAGGGG CCACAGGGTT TTGCGCTGAT TGACTTTGAC
CGGGGTGAAA TCCGCAATCC CGCGAATAGC TGGCAGCAAG CCAACCTGTC CAGACTGAGA
CGCTCTTTTG ATAAAGAAAA AGGCAAGCTT CCTTCGCTTG CCTTCGATGA GTCCTGCTGG
CAATGGCTAC TGGAGGGTTA CGCTGCTGCG TAA
|
|---|
| Protein sequence | MAAGSTLWTR IPAMQQQNHP PYTLAIAQGE SISLDPSHFT PEHWQALAAV TGTSKGRYTT
WFVRHPEANQ DWVLRHYWRG GLMEKFSKDR YLYTGMANTR AIAELALLEK LHAEGFPVPR
PVGARVRRYA LWYSADILIE RMPGCRDLLA WLEQGPLDEA EWKALGVCIA RFHHRGVYHA
DLNAKNILKG PQGFALIDFD RGEIRNPANS WQQANLSRLR RSFDKEKGKL PSLAFDESCW
QWLLEGYAAA
|
|---|
| |