Gene Sama_0099 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0099 
Symbol 
ID4602356 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp112290 
End bp112925 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content50% 
IMG OID639779411 
ProductTetR family transcriptional regulator 
Protein accessionYP_925981 
Protein GI119773241 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0469573 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000212753 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAACCC GCGACAAAAT CATTCAGGCC AGCCTGGAGC TCTTTAACGA GCATGGCGAG 
CGCACCATTA CGACCAATCA TATCGCTGCC CATCTGGATA TCAGCCCCGG CAACCTCTAT
TACCACTTCC GAAACAAGGA AGACATTATC CGTTGCATCT TCGACCAGTA CGAACAGCAC
CTGTTGCTGG GCTTTAAGCC CTATGCGGAT CAAAAGGTCG ACCTTGAACT GCTGATGAGC
TATTTCGATG CCATGTTCTA CACCATGTGG CAGTTCCGTT TTATGTACGC CAACCTGGCA
GACATTCTCG CCCGCGATGA CACTCTCAAG GCACGTTATC TCAAGGTACA ACAAGCCGTG
CTGGAACAGT CGATTGCCGT TCTCAATCAA TTGAAAAAGG ATGGTATTTT ACAAATCGAA
GACGAGCGCA TTGCCGATTT GGCCGACACC ATCAAGATGA TTATCGGCTT TTGGATCAGC
TACAAGCTGA CCCAATCCAG CATTGCCACC ATCAGCAAGG CATCGCTTTA CGAAGGTCTG
TTACGGGTAC TGATGATTTT CAAGGCCTAC TCCACCCCGG ATTCACTGGC CAACTTCGAC
CGTCTCGAGC AGCATTTTCG CTCTCAATCC AACTGA
 
Protein sequence
MKTRDKIIQA SLELFNEHGE RTITTNHIAA HLDISPGNLY YHFRNKEDII RCIFDQYEQH 
LLLGFKPYAD QKVDLELLMS YFDAMFYTMW QFRFMYANLA DILARDDTLK ARYLKVQQAV
LEQSIAVLNQ LKKDGILQIE DERIADLADT IKMIIGFWIS YKLTQSSIAT ISKASLYEGL
LRVLMIFKAY STPDSLANFD RLEQHFRSQS N