Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0086 |
Symbol | |
ID | 4602343 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 96995 |
End bp | 98335 |
Gene Length | 1341 bp |
Protein Length | 446 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639779398 |
Product | coproporphyrinogen III oxidase |
Protein accession | YP_925968 |
Protein GI | 119773228 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
TIGRFAM ID | [TIGR00538] oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.652683 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.197179 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGAGA AATACAACTA CAGCGGTCCC CGTTATACCT CTTATCCGAC GGCGCTGGAG TTCAACGACG GCTTTACAGA GCAGGATTTG CTGAGTGCCA TTGAGCACAG CAAGAGCGAT AAGTTGTCAC TTTATATTCA CATCCCCTTC TGTGCCAAGC TTTGTTATTA CTGCGGCTGC AACAAGGTCA TCACCCGCCA CGCCCATAAG GCCGATCAGT ACATTGAGTA TCTGGCGAGT GAAATCTTAA ACCGTGCCCC ACTGTTCAAG GGCTACACGG TTACTCAGAT GCACTGGGGC GGTGGTACCC CTACTTTCCT GAGCCCTGAG CAAATTCTGC GGCTGACCAA GCTTTTAAAG GACAACTTCA ACTTCGCCGA TGAAGGTGAA TTCTCCATTG AAGTTGACCC GCGCGAAATT GAGCTGACCA TGCTCGACAC CCTCAAGGAA GCCGGTTTCA ACCGTATTTC TATTGGGGTG CAGGACTTCA ACAAGCAGGT TCAGGAAGCG GTAAACCGTC CACAGGACGA GCAGTTTATT TTCGACCTGA TTGGCAAGGC CAAGGCCATG GGCTTTGAGT CCACCAACGT GGATTTGATT TACGGCCTGC CCCATCAGAC ACCGGAAACC TTCGCTGAAA CCATCCAGCG CATTCTGGAC CTGTCGCCTG ACCGTCTGTC GGTGTTCAAC TACGCCCACC TGCCTGCGCG CTTTGCCGCC CAGCGCAAGA TCAAGGACGA AGATCTGCCA TCACCGCAGC AGAAGCTGGA AATCCTGCAC CAGACCATCG AGACCCTGGT GGACGCCGGA TATCAGTACA TCGGCATGGA TCACTTCGCC AAGCCCGATG ACGAGCTGGC GCGCCTGCAA CGCGAAGGCA AGCTGCACCG CAACTTCCAA GGCTATACTA CCCAGGAAGA ATGTGACCTG CTGGGTCTGG GTGTATCGTC CATCAGCCAG ATTGGCGATT GCTACGCCCA AAACCAGAAA GATATCCGCC CATACTACGA AGCCATAGAC GACCATGGCC ATGCGCTGTG GAAGGGTTGC AAACTGAACC ACGACGACGA AATCCGCCGG GTGGTCATCA AGCAGCTGAT CTGTCATTTC GACCTGGATA TGGCTGTTAT CGATGAGAAG TTTGGCTTCA CCTTCGAAGA CTACTTCGCT CAGGATTTGA AACTGCTGCA GACCTTTATC GACGACAAGC TGGTGACCAT TGAGAACCGT CGTATTCATG TGTCTGATAC CGGCCGTCTG CTTATCCGTA ATATCTGTAT GTGCTTTGAC GTGTACTTCC GCGAGAAGGC CCGTCAGCAG CAGTTCTCAC GGGTAATTTA A
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Protein sequence | MIEKYNYSGP RYTSYPTALE FNDGFTEQDL LSAIEHSKSD KLSLYIHIPF CAKLCYYCGC NKVITRHAHK ADQYIEYLAS EILNRAPLFK GYTVTQMHWG GGTPTFLSPE QILRLTKLLK DNFNFADEGE FSIEVDPREI ELTMLDTLKE AGFNRISIGV QDFNKQVQEA VNRPQDEQFI FDLIGKAKAM GFESTNVDLI YGLPHQTPET FAETIQRILD LSPDRLSVFN YAHLPARFAA QRKIKDEDLP SPQQKLEILH QTIETLVDAG YQYIGMDHFA KPDDELARLQ REGKLHRNFQ GYTTQEECDL LGLGVSSISQ IGDCYAQNQK DIRPYYEAID DHGHALWKGC KLNHDDEIRR VVIKQLICHF DLDMAVIDEK FGFTFEDYFA QDLKLLQTFI DDKLVTIENR RIHVSDTGRL LIRNICMCFD VYFREKARQQ QFSRVI
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